SMTL ID : 5kdr.1

The crystal structure of carboxyltransferase from Staphylococcus Aureus bound to the antimicrobial agent moiramide B.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.198, R.308 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.198, A:R.308 SO4.2: 3 residues within 4Å: Chain A: R.102, A.177, R.181 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.102, A:R.181 SO4.4: 2 residues within 4Å: Chain B: K.262 Chain C: H.96 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Water bridges: C:E.94 Salt bridges: C:H.96, B:K.262 SO4.7: 2 residues within 4Å: Chain C: K.198, R.308 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.198, C:R.308 SO4.8: 3 residues within 4Å: Chain C: R.102, A.177, R.181 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.102, C:R.181 SO4.10: 2 residues within 4Å: Chain A: H.96 Chain D: K.262 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain A Salt bridges: D:K.262, A:H.96 Water bridges: A:E.94

2 x YT5: Moiramide B(Non-covalent)

YT5.3: 15 residues within 4Å: Chain A: S.211, G.212, V.233, L.242 Chain B: M.134, G.166, G.167, A.168, T.206, G.207, G.208, F.230, A.231, G.232, V.235 14 PLIP interactions: 5 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:L.242, A:L.242, B:T.206, B:A.231, B:V.235, B:V.235 Hydrogen bonds: A:S.211, A:S.211, A:G.212, B:G.166, B:G.166, B:A.168, B:G.208, B:G.232 YT5.9: 15 residues within 4Å: Chain C: S.211, G.212, V.233, L.242 Chain D: M.134, G.166, G.167, A.168, T.206, G.207, G.208, F.230, A.231, G.232, V.235 14 PLIP interactions: 9 interactions with chain D, 5 interactions with chain C Hydrophobic interactions: D:T.206, D:A.231, D:V.235, D:V.235, C:L.242, C:L.242 Hydrogen bonds: D:G.166, D:G.166, D:A.168, D:G.208, D:G.232, C:S.211, C:S.211, C:G.212

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 8 residues within 4Å: Chain B: H.58, T.202, H.203, E.223, P.224, K.225, A.226, R.266 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.203, B:E.223, B:E.223, B:P.224, B:R.266 EDO.11: 8 residues within 4Å: Chain D: H.58, T.202, H.203, E.223, P.224, K.225, A.226, R.266 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:H.203, D:E.223, D:P.224, D:R.266

2 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain B: C.33, C.36, C.52, C.55 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.33, B:C.36, B:C.52, B:C.55 ZN.12: 4 residues within 4Å: Chain D: C.33, C.36, C.52, C.55 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.33, D:C.36, D:C.52, D:C.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silvers, M.A. et al., Crystal Structure of Carboxyltransferase from Staphylococcus aureus Bound to the Antibacterial Agent Moiramide B. Biochemistry (2016)

Release Date

2016-08-10

Peptides

Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha: AC
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha

Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta

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