SMTL ID : 5keg.1

Crystal structure of APOBEC3A in complex with a single-stranded DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.74, C.105, C.110 Ligands: CL.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.74, A:C.105, A:C.110

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: E.161 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: H.74, P.104, C.105, C.110 Chain B: C.9 Ligands: ZN.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kouno, T. et al., Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity. Nat Commun (2017)

Release Date

2017-05-10

Peptides

DNA dC->dU-editing enzyme APOBEC-3A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA dC->dU-editing enzyme APOBEC-3A

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