SMTL ID : 5kgl.1 (1 other biounit)

2.45A resolution structure of Apo independent phosphoglycerate mutase from C. elegans (orthorhombic form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: Y.212 Ligand excluded by PLIP

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: S.86, D.426, H.430, H.485 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.426, A:D.426, A:H.430, A:H.485

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: D.37, S.86, K.359, D.467, H.468 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.37, A:D.37, A:S.86, A:D.467, A:H.468

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.105, F.331 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.105 SO4.5: 6 residues within 4Å: Chain A: H.147, R.177, R.210, R.216, R.284, R.287 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.210 Water bridges: A:H.147 Salt bridges: A:H.147, A:R.177, A:R.216, A:R.284, A:R.287 SO4.6: 6 residues within 4Å: Chain A: R.97, A.334, S.335, N.336, K.337, E.529 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.335, A:S.335, A:N.336, A:K.337 Water bridges: A:R.97, A:S.335 Salt bridges: A:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, H. et al., Macrocycle peptides delineate locked-open inhibition mechanism for microorganism phosphoglycerate mutases. Nat Commun (2017)

Release Date

2017-04-05

Peptides

2,3-bisphosphoglycerate-independent phosphoglycerate mutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2,3-bisphosphoglycerate-independent phosphoglycerate mutase

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