SMTL ID : 5kis.1

YenB/RHS2 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.627, D.629, S.631, T.633, D.635 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.627, A:D.629, A:S.631, A:D.635, A:D.635 CA.6: 4 residues within 4Å: Chain A: D.1484 Chain B: T.9, S.370, Y.372 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:D.1484, B:T.9, B:T.9

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: N.1205, N.1207, T.1227 Chain B: K.163, N.166 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.1207, A:T.1227, A:T.1227, A:T.1227 NA.3: 5 residues within 4Å: Chain A: D.468, N.470, D.472, R.474, D.476 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.468, A:N.470

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: N.330, Y.1193 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: D.1034, R.1037 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: R.318, L.603 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: R.411, Y.413, Y.610, Y.612 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Busby, J.N. et al., Structure of a new BC complex from Yersinia entomophaga. To Be Published

Release Date

2017-08-09

Peptides

YenB: A
RHS2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

YenB

RHS2