SMTL ID : 5kiw.1

p97 ND1-L198W in complex with VIMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.41 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 17 residues within 4Å: Chain A: D.205, I.206, G.207, P.246, P.247, G.248, T.249, G.250, K.251, T.252, L.253, N.348, I.380, H.384, G.408, A.409 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.207, A:G.248, A:T.249, A:T.249, A:G.250, A:K.251, A:K.251, A:K.251, A:T.252, A:T.252, A:L.253, A:N.348 ANP.3: 16 residues within 4Å: Chain B: D.205, I.206, G.207, P.247, G.248, T.249, G.250, K.251, T.252, L.253, N.348, I.380, H.384, G.408, A.409 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.207, B:G.248, B:T.249, B:T.249, B:G.250, B:K.251, B:K.251, B:K.251, B:T.252, B:T.252, B:L.253, B:N.348

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.252, D.304 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.252 MG.4: 3 residues within 4Å: Chain B: T.252, D.304 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, W.K. et al., Structural basis for nucleotide-modulated p97 association with the ER membrane. Cell Discov (2017)

Release Date

2018-03-07

Peptides

Transitional endoplasmic reticulum ATPase: AB
Selenoprotein S: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Transitional endoplasmic reticulum ATPase

Selenoprotein S

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