- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEC: HEME C(Covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: S.52, Y.53, N.57
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.52, A:Y.53, A:N.57
- Water bridges: A:S.52
SO4.3: 6 residues within 4Å:- Chain A: P.81, G.82, T.83, K.84, M.85, K.91
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:G.82, A:K.84, A:M.85
- Water bridges: A:T.83, A:T.83
- Salt bridges: A:K.84, A:K.91
SO4.9: 3 residues within 4Å:- Chain B: S.52, Y.53, N.57
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.52, B:Y.53, B:N.57
- Water bridges: B:S.52
SO4.10: 6 residues within 4Å:- Chain B: P.81, G.82, T.83, K.84, M.85, K.91
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.82, B:K.84, B:M.85
- Water bridges: B:T.83, B:T.83
- Salt bridges: B:K.84, B:K.91
- 2 x CM5: 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE(Non-covalent)
CM5.4: 10 residues within 4Å:- Chain A: S.45, G.46, Y.53, N.57, K.60, V.62, Y.72, K.78, Y.79
- Ligands: HEC.1
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:Y.53, A:N.57, A:K.60, A:K.60, A:Y.72, A:Y.72, A:Y.79, A:Y.79, A:Y.79
- Hydrogen bonds: A:K.60
- Salt bridges: A:K.60
CM5.11: 10 residues within 4Å:- Chain B: S.45, G.46, Y.53, N.57, K.60, V.62, Y.72, K.78, Y.79
- Ligands: HEC.8
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:Y.53, B:N.57, B:K.60, B:K.60, B:Y.72, B:Y.72, B:Y.79, B:Y.79, B:Y.79
- Hydrogen bonds: B:K.60, B:Y.79
- Salt bridges: B:K.60
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 4 residues within 4Å:- Chain A: G.28, G.29, H.31, N.36
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.28, A:H.31, A:N.36
GOL.7: 1 residues within 4Å:- Chain B: F.87
No protein-ligand interaction detected (PLIP)GOL.13: 4 residues within 4Å:- Chain B: G.28, G.29, H.31, N.36
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.28, B:H.31, B:N.36
GOL.14: 1 residues within 4Å:- Chain A: F.87
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McClelland, L.J. et al., Cytochrome c Can Form a Well-Defined Binding Pocket for Hydrocarbons. J. Am. Chem. Soc. (2016)
- Release Date
- 2017-03-22
- Peptides
- Cytochrome c iso-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEC: HEME C(Covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CM5: 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McClelland, L.J. et al., Cytochrome c Can Form a Well-Defined Binding Pocket for Hydrocarbons. J. Am. Chem. Soc. (2016)
- Release Date
- 2017-03-22
- Peptides
- Cytochrome c iso-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A