SMTL ID : 5kl7.1

Wilms Tumor Protein (WT1) ZnF2-4Q369R in complex with carboxylated DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.11, F.13, C.16, R.18, H.29, H.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.16, A:H.29, A:H.33 ZN.2: 5 residues within 4Å: Chain A: C.41, T.43, C.44, H.57, H.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:C.44, A:H.57, A:H.61 ZN.3: 6 residues within 4Å: Chain A: C.69, W.71, C.74, K.76, H.87, H.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.74, A:H.87, A:H.91

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 9 residues within 4Å: Chain A: R.28, H.29, R.31, R.32, S.49, R.50 Chain B: T.5, G.6, G.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.49, A:R.50 Water bridges: A:R.28 EDO.5: 8 residues within 4Å: Chain A: R.22, D.24, R.25, R.28 Chain B: X.9, G.10 Chain C: C.3, G.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.22 Water bridges: A:D.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications. Nucleic Acids Res. (2016)

Release Date

2016-09-14

Peptides

Wilms tumor protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wilms tumor protein

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