SMTL ID : 5kl9.1

Crystal structure of a putative acyl-CoA thioesterase EC709/ECK0725 from Escherichia coli in complex with CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-tetramer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 13 residues within 4Å: Chain A: V.23, H.25, Y.66, Y.67, A.68, P.69, T.102 Chain D: V.58, V.59, R.60, V.114, M.119, P.121 8 PLIP interactions: 2 interactions with chain A, 6 interactions with chain D Hydrogen bonds: A:Y.66, D:V.59, D:V.59 Water bridges: A:A.70 Hydrophobic interactions: D:V.58, D:V.114, D:P.121 Salt bridges: D:R.60 COA.8: 13 residues within 4Å: Chain A: V.58, V.59, R.60, V.114, M.119, P.121 Chain D: V.23, H.25, Y.66, Y.67, A.68, P.69, T.102 8 PLIP interactions: 1 interactions with chain D, 7 interactions with chain A Hydrogen bonds: D:Y.66, A:V.59, A:V.59 Hydrophobic interactions: A:V.58, A:V.58, A:V.114, A:P.121 Salt bridges: A:R.60

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.122, P.125, K.126 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.126 Water bridges: A:S.127 Salt bridges: A:R.122, A:K.126 SO4.5: 2 residues within 4Å: Chain B: R.11, M.75 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:R.41, B:R.11 Salt bridges: B:R.11 SO4.6: 4 residues within 4Å: Chain B: E.53, L.124, P.125, K.126 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.126 SO4.7: 3 residues within 4Å: Chain C: R.7, Q.79, N.101 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.79, C:N.101 Salt bridges: C:R.7 SO4.9: 2 residues within 4Å: Chain D: L.5, R.7 5 PLIP interactions: 5 interactions with chain D Water bridges: D:Q.79, D:Q.79, D:Q.79, D:N.101 Salt bridges: D:R.7

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: R.7, Q.79 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.7, A:R.7, A:Q.79 Water bridges: A:N.101 GOL.4: 1 residues within 4Å: Chain A: R.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.54, A:R.54 GOL.10: 5 residues within 4Å: Chain D: F.45, S.46, A.49, L.50, E.53 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J., Crystal structure of a putative acyl-CoA thioesterase EC709/ECK0725 from Escherichia coli in complex with CoA. To Be Published

Release Date

2016-07-06

Peptides

Acyl-CoA thioester hydrolase YbgC: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acyl-CoA thioester hydrolase YbgC