- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 2VS: (2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoic acid(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.2: 4 residues within 4Å:- Chain A: N.57, I.58, D.125, E.216
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.58, A:D.125
- Water bridges: A:E.216
NA.5: 4 residues within 4Å:- Chain B: N.57, I.58, D.125, E.216
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.58, B:D.125
NA.8: 4 residues within 4Å:- Chain C: N.57, I.58, D.125, E.216
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:I.58, C:I.58
NA.11: 4 residues within 4Å:- Chain D: N.57, I.58, D.125, E.216
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:I.58, D:I.58
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 28 residues within 4Å:- Chain A: I.185, S.186, P.187, W.188, K.212, S.214, E.215, F.244, G.245, K.246, G.250, E.251, T.254, F.264, T.265, G.266, E.267, T.270, T.273, E.288, L.289, G.290, C.322, H.369, K.372, E.424, F.426
- Ligands: 2VS.1
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:P.187
- Hydrogen bonds: A:S.186, A:K.212, A:E.215, A:G.266, A:E.267, A:E.288, A:H.369, A:K.372, A:K.372
- Water bridges: A:W.188, A:E.215, A:K.246, A:K.246, A:E.267
- pi-Stacking: A:F.426
NAD.6: 27 residues within 4Å:- Chain B: I.185, S.186, P.187, W.188, K.212, S.214, E.215, F.244, G.245, G.250, E.251, T.254, F.264, T.265, G.266, E.267, T.270, T.273, E.288, L.289, G.290, C.322, H.369, K.372, E.424, F.426
- Ligands: 2VS.4
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:P.187
- Hydrogen bonds: B:S.186, B:K.212, B:E.215, B:G.266, B:E.267, B:T.270, B:T.270, B:E.288, B:H.369, B:K.372, B:K.372, B:E.424
- Salt bridges: B:K.269
- pi-Stacking: B:F.426
NAD.9: 28 residues within 4Å:- Chain C: I.185, S.186, P.187, W.188, K.212, S.214, E.215, F.244, G.245, K.246, G.250, E.251, T.254, F.264, T.265, G.266, E.267, T.270, T.273, E.288, L.289, G.290, C.322, H.369, K.372, E.424, F.426
- Ligands: 2VS.7
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:P.187
- Hydrogen bonds: C:S.186, C:K.212, C:E.215, C:K.246, C:G.266, C:E.267, C:T.270, C:T.270, C:E.288, C:H.369, C:K.372, C:K.372, C:E.424
- Water bridges: C:W.188, C:E.215
- pi-Stacking: C:F.426
NAD.12: 29 residues within 4Å:- Chain D: I.185, S.186, P.187, W.188, K.212, P.213, S.214, E.215, F.244, G.245, K.246, G.250, E.251, T.254, F.264, T.265, G.266, E.267, T.270, T.273, E.288, L.289, G.290, C.322, H.369, K.372, E.424, F.426
- Ligands: 2VS.10
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:P.187
- Hydrogen bonds: D:S.186, D:K.212, D:E.215, D:K.246, D:K.246, D:G.266, D:E.267, D:E.288, D:H.369, D:K.372, D:K.372
- Water bridges: D:G.245
- pi-Stacking: D:F.426
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Y. et al., A Pitcher-and-Catcher Mechanism Drives Endogenous Substrate Isomerization by a Dehydrogenase in Kynurenine Metabolism. J.Biol.Chem. (2016)
- Release Date
- 2016-11-09
- Peptides
- 2-aminomuconate 6-semialdehyde dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 2VS: (2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoic acid(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Y. et al., A Pitcher-and-Catcher Mechanism Drives Endogenous Substrate Isomerization by a Dehydrogenase in Kynurenine Metabolism. J.Biol.Chem. (2016)
- Release Date
- 2016-11-09
- Peptides
- 2-aminomuconate 6-semialdehyde dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D