SMTL ID : 5km8.1

Human Histidine Triad Nucleotide Binding Protein 2 (hHint2) Cidofovir complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: N.115, S.123, H.130 Ligands: DMS.2 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: A.121, S.123 Chain B: W.139 Ligands: CL.1 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A pi-Cation interactions: B:W.139 Hydrogen bonds: A:S.123

1 x L8P: ({[(2S)-1-(4-amino-2-oxopyrimidin-1(2H)-yl)-3-hydroxypropan-2-yl]oxy}methyl)phosphonic acid(Non-covalent)

L8P.3: 9 residues within 4Å: Chain A: W.139 Chain B: Q.63, N.115, A.121, Q.122, S.123, V.124, H.128, H.130 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.115, B:A.121, B:S.123, B:V.124 Water bridges: B:Q.63, B:Q.63, B:N.115

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain B: P.62, Q.63, A.64, P.65, R.135 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.135 EDO.5: 4 residues within 4Å: Chain B: G.105, L.106, G.107, D.108 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.105, B:D.108, B:D.108, B:D.108

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain B: Y.49, D.51, Q.53, H.92 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.51, B:Q.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maize, K.M. et al., A Crystal Structure Based Guide to the Design of Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) Activated ProTides. Mol. Pharm. (2017)

Release Date

2017-06-28

Peptides

Histidine triad nucleotide-binding protein 2, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histidine triad nucleotide-binding protein 2, mitochondrial

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