SMTL ID : 5kmg.1 (2 other biounits)

Near-atomic cryo-EM structure of PRC1 bound to the microtubule

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-14-14-14-mer

Ligands

14 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 25 residues within 4Å: Chain A: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain B: L.246, K.252 Ligands: MG.2 19 PLIP interactions: 17 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.11, A:A.12, A:A.99, A:A.100, A:N.101, A:S.140, A:G.144, A:T.145, A:T.145, A:G.146, A:T.179, A:N.206, A:N.206, A:N.228, A:N.228 pi-Stacking: A:Y.224, A:Y.224 Salt bridges: B:K.252, B:K.252 GTP.5: 25 residues within 4Å: Chain D: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain E: L.246, K.252 Ligands: MG.6 19 PLIP interactions: 17 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:Q.11, D:A.12, D:A.99, D:A.100, D:N.101, D:S.140, D:G.144, D:T.145, D:T.145, D:G.146, D:T.179, D:N.206, D:N.206, D:N.228, D:N.228 pi-Stacking: D:Y.224, D:Y.224 Salt bridges: E:K.252, E:K.252 GTP.9: 25 residues within 4Å: Chain G: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain H: L.246, K.252 Ligands: MG.10 19 PLIP interactions: 17 interactions with chain G, 2 interactions with chain H Hydrogen bonds: G:Q.11, G:A.12, G:A.99, G:A.100, G:N.101, G:S.140, G:G.144, G:T.145, G:T.145, G:G.146, G:T.179, G:N.206, G:N.206, G:N.228, G:N.228 pi-Stacking: G:Y.224, G:Y.224 Salt bridges: H:K.252, H:K.252 GTP.13: 25 residues within 4Å: Chain J: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain K: L.246, K.252 Ligands: MG.14 19 PLIP interactions: 2 interactions with chain K, 17 interactions with chain J Salt bridges: K:K.252, K:K.252 Hydrogen bonds: J:Q.11, J:A.12, J:A.99, J:A.100, J:N.101, J:S.140, J:G.144, J:T.145, J:T.145, J:G.146, J:T.179, J:N.206, J:N.206, J:N.228, J:N.228 pi-Stacking: J:Y.224, J:Y.224 GTP.17: 25 residues within 4Å: Chain M: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain N: L.246, K.252 Ligands: MG.18 19 PLIP interactions: 17 interactions with chain M, 2 interactions with chain N Hydrogen bonds: M:Q.11, M:A.12, M:A.99, M:A.100, M:N.101, M:S.140, M:G.144, M:T.145, M:T.145, M:G.146, M:T.179, M:N.206, M:N.206, M:N.228, M:N.228 pi-Stacking: M:Y.224, M:Y.224 Salt bridges: N:K.252, N:K.252 GTP.21: 25 residues within 4Å: Chain P: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain Q: L.246, K.252 Ligands: MG.22 19 PLIP interactions: 17 interactions with chain P, 2 interactions with chain Q Hydrogen bonds: P:Q.11, P:A.12, P:A.99, P:A.100, P:N.101, P:S.140, P:G.144, P:T.145, P:T.145, P:G.146, P:T.179, P:N.206, P:N.206, P:N.228, P:N.228 pi-Stacking: P:Y.224, P:Y.224 Salt bridges: Q:K.252, Q:K.252 GTP.25: 25 residues within 4Å: Chain S: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain T: L.246, K.252 Ligands: MG.26 19 PLIP interactions: 17 interactions with chain S, 2 interactions with chain T Hydrogen bonds: S:Q.11, S:A.12, S:A.99, S:A.100, S:N.101, S:S.140, S:G.144, S:T.145, S:T.145, S:G.146, S:T.179, S:N.206, S:N.206, S:N.228, S:N.228 pi-Stacking: S:Y.224, S:Y.224 Salt bridges: T:K.252, T:K.252 GTP.29: 25 residues within 4Å: Chain V: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain W: L.246, K.252 Ligands: MG.30 19 PLIP interactions: 17 interactions with chain V, 2 interactions with chain W Hydrogen bonds: V:Q.11, V:A.12, V:A.99, V:A.100, V:N.101, V:S.140, V:G.144, V:T.145, V:T.145, V:G.146, V:T.179, V:N.206, V:N.206, V:N.228, V:N.228 pi-Stacking: V:Y.224, V:Y.224 Salt bridges: W:K.252, W:K.252 GTP.33: 25 residues within 4Å: Chain Y: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain Z: L.246, K.252 Ligands: MG.34 19 PLIP interactions: 17 interactions with chain Y, 2 interactions with chain Z Hydrogen bonds: Y:Q.11, Y:A.12, Y:A.99, Y:A.100, Y:N.101, Y:S.140, Y:G.144, Y:T.145, Y:T.145, Y:G.146, Y:T.179, Y:N.206, Y:N.206, Y:N.228, Y:N.228 pi-Stacking: Y:Y.224, Y:Y.224 Salt bridges: Z:K.252, Z:K.252 GTP.37: 25 residues within 4Å: Chain 1: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain 2: L.246, K.252 Ligands: MG.38 19 PLIP interactions: 17 interactions with chain 1, 2 interactions with chain 2 Hydrogen bonds: 1:Q.11, 1:A.12, 1:A.99, 1:A.100, 1:N.101, 1:S.140, 1:G.144, 1:T.145, 1:T.145, 1:G.146, 1:T.179, 1:N.206, 1:N.206, 1:N.228, 1:N.228 pi-Stacking: 1:Y.224, 1:Y.224 Salt bridges: 2:K.252, 2:K.252 GTP.41: 25 residues within 4Å: Chain 4: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain 5: L.246, K.252 Ligands: MG.42 19 PLIP interactions: 2 interactions with chain 5, 17 interactions with chain 4 Salt bridges: 5:K.252, 5:K.252 Hydrogen bonds: 4:Q.11, 4:A.12, 4:A.99, 4:A.100, 4:N.101, 4:S.140, 4:G.144, 4:T.145, 4:T.145, 4:G.146, 4:T.179, 4:N.206, 4:N.206, 4:N.228, 4:N.228 pi-Stacking: 4:Y.224, 4:Y.224 GTP.45: 25 residues within 4Å: Chain 7: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain 8: L.246, K.252 Ligands: MG.46 19 PLIP interactions: 17 interactions with chain 7, 2 interactions with chain 8 Hydrogen bonds: 7:Q.11, 7:A.12, 7:A.99, 7:A.100, 7:N.101, 7:S.140, 7:G.144, 7:T.145, 7:T.145, 7:G.146, 7:T.179, 7:N.206, 7:N.206, 7:N.228, 7:N.228 pi-Stacking: 7:Y.224, 7:Y.224 Salt bridges: 8:K.252, 8:K.252 GTP.49: 25 residues within 4Å: Ligands: MG.50 Chain a: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain b: L.246, K.252 19 PLIP interactions: 17 interactions with chain a, 2 interactions with chain b Hydrogen bonds: a:Q.11, a:A.12, a:A.99, a:A.100, a:N.101, a:S.140, a:G.144, a:T.145, a:T.145, a:G.146, a:T.179, a:N.206, a:N.206, a:N.228, a:N.228 pi-Stacking: a:Y.224, a:Y.224 Salt bridges: b:K.252, b:K.252 GTP.53: 25 residues within 4Å: Ligands: MG.54 Chain d: G.10, Q.11, A.12, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, F.141, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231 Chain e: L.246, K.252 19 PLIP interactions: 17 interactions with chain d, 2 interactions with chain e Hydrogen bonds: d:Q.11, d:A.12, d:A.99, d:A.100, d:N.101, d:S.140, d:G.144, d:T.145, d:T.145, d:G.146, d:T.179, d:N.206, d:N.206, d:N.228, d:N.228 pi-Stacking: d:Y.224, d:Y.224 Salt bridges: e:K.252, e:K.252

14 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Q.11, D.69, E.71 Ligands: GTP.1 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain D: Q.11, D.69, E.71 Ligands: GTP.5 No protein-ligand interaction detected (PLIP) MG.10: 4 residues within 4Å: Chain G: Q.11, D.69, E.71 Ligands: GTP.9 No protein-ligand interaction detected (PLIP) MG.14: 4 residues within 4Å: Chain J: Q.11, D.69, E.71 Ligands: GTP.13 No protein-ligand interaction detected (PLIP) MG.18: 4 residues within 4Å: Chain M: Q.11, D.69, E.71 Ligands: GTP.17 No protein-ligand interaction detected (PLIP) MG.22: 4 residues within 4Å: Chain P: Q.11, D.69, E.71 Ligands: GTP.21 No protein-ligand interaction detected (PLIP) MG.26: 4 residues within 4Å: Chain S: Q.11, D.69, E.71 Ligands: GTP.25 No protein-ligand interaction detected (PLIP) MG.30: 4 residues within 4Å: Chain V: Q.11, D.69, E.71 Ligands: GTP.29 No protein-ligand interaction detected (PLIP) MG.34: 4 residues within 4Å: Chain Y: Q.11, D.69, E.71 Ligands: GTP.33 No protein-ligand interaction detected (PLIP) MG.38: 4 residues within 4Å: Chain 1: Q.11, D.69, E.71 Ligands: GTP.37 No protein-ligand interaction detected (PLIP) MG.42: 4 residues within 4Å: Chain 4: Q.11, D.69, E.71 Ligands: GTP.41 No protein-ligand interaction detected (PLIP) MG.46: 4 residues within 4Å: Chain 7: Q.11, D.69, E.71 Ligands: GTP.45 No protein-ligand interaction detected (PLIP) MG.50: 4 residues within 4Å: Ligands: GTP.49 Chain a: Q.11, D.69, E.71 No protein-ligand interaction detected (PLIP) MG.54: 4 residues within 4Å: Ligands: GTP.53 Chain d: Q.11, D.69, E.71 No protein-ligand interaction detected (PLIP)

14 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 17 residues within 4Å: Chain B: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:Q.11, B:C.12, B:Q.15, B:S.138, B:G.142, B:T.143, B:T.143, B:G.144, B:D.177, B:D.177, B:N.204, B:N.204, B:N.226, B:N.226 GDP.7: 17 residues within 4Å: Chain E: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:Q.11, E:C.12, E:Q.15, E:S.138, E:G.142, E:T.143, E:T.143, E:G.144, E:D.177, E:D.177, E:N.204, E:N.204, E:N.226, E:N.226 GDP.11: 17 residues within 4Å: Chain H: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain H Hydrogen bonds: H:Q.11, H:C.12, H:Q.15, H:S.138, H:G.142, H:T.143, H:T.143, H:G.144, H:D.177, H:D.177, H:N.204, H:N.204, H:N.226, H:N.226 GDP.15: 17 residues within 4Å: Chain K: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain K Hydrogen bonds: K:Q.11, K:C.12, K:Q.15, K:S.138, K:G.142, K:T.143, K:T.143, K:G.144, K:D.177, K:D.177, K:N.204, K:N.204, K:N.226, K:N.226 GDP.19: 17 residues within 4Å: Chain N: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain N Hydrogen bonds: N:Q.11, N:C.12, N:Q.15, N:S.138, N:G.142, N:T.143, N:T.143, N:G.144, N:D.177, N:D.177, N:N.204, N:N.204, N:N.226, N:N.226 GDP.23: 17 residues within 4Å: Chain Q: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain Q Hydrogen bonds: Q:Q.11, Q:C.12, Q:Q.15, Q:S.138, Q:G.142, Q:T.143, Q:T.143, Q:G.144, Q:D.177, Q:D.177, Q:N.204, Q:N.204, Q:N.226, Q:N.226 GDP.27: 17 residues within 4Å: Chain T: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain T Hydrogen bonds: T:Q.11, T:C.12, T:Q.15, T:S.138, T:G.142, T:T.143, T:T.143, T:G.144, T:D.177, T:D.177, T:N.204, T:N.204, T:N.226, T:N.226 GDP.31: 17 residues within 4Å: Chain W: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain W Hydrogen bonds: W:Q.11, W:C.12, W:Q.15, W:S.138, W:G.142, W:T.143, W:T.143, W:G.144, W:D.177, W:D.177, W:N.204, W:N.204, W:N.226, W:N.226 GDP.35: 17 residues within 4Å: Chain Z: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain Z Hydrogen bonds: Z:Q.11, Z:C.12, Z:Q.15, Z:S.138, Z:G.142, Z:T.143, Z:T.143, Z:G.144, Z:D.177, Z:D.177, Z:N.204, Z:N.204, Z:N.226, Z:N.226 GDP.39: 17 residues within 4Å: Chain 2: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain 2 Hydrogen bonds: 2:Q.11, 2:C.12, 2:Q.15, 2:S.138, 2:G.142, 2:T.143, 2:T.143, 2:G.144, 2:D.177, 2:D.177, 2:N.204, 2:N.204, 2:N.226, 2:N.226 GDP.43: 17 residues within 4Å: Chain 5: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain 5 Hydrogen bonds: 5:Q.11, 5:C.12, 5:Q.15, 5:S.138, 5:G.142, 5:T.143, 5:T.143, 5:G.144, 5:D.177, 5:D.177, 5:N.204, 5:N.204, 5:N.226, 5:N.226 GDP.47: 17 residues within 4Å: Chain 8: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain 8 Hydrogen bonds: 8:Q.11, 8:C.12, 8:Q.15, 8:S.138, 8:G.142, 8:T.143, 8:T.143, 8:G.144, 8:D.177, 8:D.177, 8:N.204, 8:N.204, 8:N.226, 8:N.226 GDP.51: 17 residues within 4Å: Chain b: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain b Hydrogen bonds: b:Q.11, b:C.12, b:Q.15, b:S.138, b:G.142, b:T.143, b:T.143, b:G.144, b:D.177, b:D.177, b:N.204, b:N.204, b:N.226, b:N.226 GDP.55: 17 residues within 4Å: Chain e: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, L.139, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain e Hydrogen bonds: e:Q.11, e:C.12, e:Q.15, e:S.138, e:G.142, e:T.143, e:T.143, e:G.144, e:D.177, e:D.177, e:N.204, e:N.204, e:N.226, e:N.226

14 x POU: Peloruside A(Non-covalent)

POU.4: 11 residues within 4Å: Chain 2: D.118, R.121, K.122 Chain B: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain 2 Hydrophobic interactions: B:F.294, B:F.294, B:V.333, B:Y.340, 2:D.118, 2:R.121 Hydrogen bonds: B:D.295, B:A.296, B:R.306, B:Y.310, 2:D.118, 2:K.122 Salt bridges: B:R.306 POU.8: 11 residues within 4Å: Chain E: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain H: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain E, 4 interactions with chain H Hydrophobic interactions: E:F.294, E:F.294, E:V.333, E:Y.340, H:D.118, H:R.121 Hydrogen bonds: E:D.295, E:A.296, E:R.306, E:Y.310, H:D.118, H:K.122 Salt bridges: E:R.306 POU.12: 11 residues within 4Å: Chain H: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain K: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain H, 4 interactions with chain K Hydrophobic interactions: H:F.294, H:F.294, H:V.333, H:Y.340, K:D.118, K:R.121 Hydrogen bonds: H:D.295, H:A.296, H:R.306, H:Y.310, K:D.118, K:K.122 Salt bridges: H:R.306 POU.16: 11 residues within 4Å: Chain K: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain N: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain K, 4 interactions with chain N Hydrophobic interactions: K:F.294, K:F.294, K:V.333, K:Y.340, N:D.118, N:R.121 Hydrogen bonds: K:D.295, K:A.296, K:R.306, K:Y.310, N:D.118, N:K.122 Salt bridges: K:R.306 POU.20: 11 residues within 4Å: Chain N: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain Q: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain N, 4 interactions with chain Q Hydrophobic interactions: N:F.294, N:F.294, N:V.333, N:Y.340, Q:D.118, Q:R.121 Hydrogen bonds: N:D.295, N:A.296, N:R.306, N:Y.310, Q:D.118, Q:K.122 Salt bridges: N:R.306 POU.24: 11 residues within 4Å: Chain Q: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain T: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain Q, 4 interactions with chain T Hydrophobic interactions: Q:F.294, Q:F.294, Q:V.333, Q:Y.340, T:D.118, T:R.121 Hydrogen bonds: Q:D.295, Q:A.296, Q:R.306, Q:Y.310, T:D.118, T:K.122 Salt bridges: Q:R.306 POU.28: 11 residues within 4Å: Chain T: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain W: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain T, 4 interactions with chain W Hydrophobic interactions: T:F.294, T:F.294, T:V.333, T:Y.340, W:D.118, W:R.121 Hydrogen bonds: T:D.295, T:A.296, T:R.306, T:Y.310, W:D.118, W:K.122 Salt bridges: T:R.306 POU.32: 11 residues within 4Å: Chain W: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain Z: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain W, 4 interactions with chain Z Hydrophobic interactions: W:F.294, W:F.294, W:V.333, W:Y.340, Z:D.118, Z:R.121 Hydrogen bonds: W:D.295, W:A.296, W:R.306, W:Y.310, Z:D.118, Z:K.122 Salt bridges: W:R.306 POU.36: 11 residues within 4Å: Chain B: D.118, R.121, K.122 Chain Z: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 13 PLIP interactions: 4 interactions with chain B, 9 interactions with chain Z Hydrophobic interactions: B:D.118, B:R.121, Z:F.294, Z:F.294, Z:V.333, Z:Y.340 Hydrogen bonds: B:D.118, B:K.122, Z:D.295, Z:A.296, Z:R.306, Z:Y.310 Salt bridges: Z:R.306 POU.40: 11 residues within 4Å: Chain 2: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain 5: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain 2, 4 interactions with chain 5 Hydrophobic interactions: 2:F.294, 2:F.294, 2:V.333, 2:Y.340, 5:D.118, 5:R.121 Hydrogen bonds: 2:D.295, 2:A.296, 2:R.306, 2:Y.310, 5:D.118, 5:K.122 Salt bridges: 2:R.306 POU.44: 11 residues within 4Å: Chain 5: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain 8: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain 5, 4 interactions with chain 8 Hydrophobic interactions: 5:F.294, 5:F.294, 5:V.333, 5:Y.340, 8:D.118, 8:R.121 Hydrogen bonds: 5:D.295, 5:A.296, 5:R.306, 5:Y.310, 8:D.118, 8:K.122 Salt bridges: 5:R.306 POU.48: 11 residues within 4Å: Chain 8: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain b: D.118, R.121, K.122 13 PLIP interactions: 4 interactions with chain b, 9 interactions with chain 8 Hydrophobic interactions: b:D.118, b:R.121, 8:F.294, 8:F.294, 8:V.333, 8:Y.340 Hydrogen bonds: b:D.118, b:K.122, 8:D.295, 8:A.296, 8:R.306, 8:Y.310 Salt bridges: 8:R.306 POU.52: 11 residues within 4Å: Chain b: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 Chain e: D.118, R.121, K.122 13 PLIP interactions: 9 interactions with chain b, 4 interactions with chain e Hydrophobic interactions: b:F.294, b:F.294, b:V.333, b:Y.340, e:D.118, e:R.121 Hydrogen bonds: b:D.295, b:A.296, b:R.306, b:Y.310, e:D.118, e:K.122 Salt bridges: b:R.306 POU.56: 8 residues within 4Å: Chain e: F.294, D.295, A.296, R.306, Y.310, V.333, N.337, Y.340 9 PLIP interactions: 9 interactions with chain e Hydrophobic interactions: e:F.294, e:F.294, e:V.333, e:Y.340 Hydrogen bonds: e:D.295, e:A.296, e:R.306, e:Y.310 Salt bridges: e:R.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kellogg, E.H. et al., Near-atomic cryo-EM structure of PRC1 bound to the microtubule. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-08-03

Peptides

Tubulin alpha-1B chain: ADGJMPSVY147ad
Tubulin beta chain: BEHKNQTWZ258be
Protein regulator of cytokinesis 1: CFILORUX0369cf

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

M
A

P
A

S
A

V
A

Y
A

1
A

4
A

7
A

a
A

d
A

B
B

E
B

H
B

K
B

N
B

Q
B

T
B

W
B

Z
B

2
B

5
B

8
B

b
B

e
B

C
P

F
P

I
P

L
P

O
P

R
P

U
P

X
P

0
P

3
P

6
P

9
P

c
P

f
P

Tubulin alpha-1B chain

Tubulin beta chain

Protein regulator of cytokinesis 1

Related Entries With Identical Sequence