SMTL ID : 5kn9.1

MutY N-terminal domain in complex with DNA containing an intrahelical oxoG:A base-pair

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain A: R.156, L.157, V.200, C.201, P.206, C.208, C.211, Q.214, C.217, F.220, A.225 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.201, A:C.208, A:C.211, A:C.217

2 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.2: 3 residues within 4Å: Chain A: S.121, V.126 Chain C: A.9 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.121, A:V.126, H2O.2, H2O.3, H2O.4 CA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., Structural Basis for the Lesion-scanning Mechanism of the MutY DNA Glycosylase. J. Biol. Chem. (2017)

Release Date

2017-02-08

Peptides

Adenine DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenine DNA glycosylase