SMTL ID : 5kne.1

CryoEM Reconstruction of Hsp104 Hexamer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

11 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 7 residues within 4Å: Chain A: S.611, G.612, S.613, G.614, K.615, T.616, E.617 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.612, A:S.613, A:G.614, A:K.615, A:K.615, A:T.616, A:E.617 ANP.2: 9 residues within 4Å: Chain B: V.181, I.182, P.209, G.210, I.211, G.212, K.213, T.214, A.215 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:I.182, B:I.182, B:G.210, B:G.212, B:K.213, B:T.214, B:A.215 ANP.3: 10 residues within 4Å: Chain B: E.574, V.575, V.576, S.611, G.612, S.613, G.614, K.615, T.616, E.617 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.574, B:V.576, B:G.612, B:S.613, B:G.614, B:T.616, B:E.617 ANP.4: 11 residues within 4Å: Chain C: P.180, V.181, I.182, E.208, P.209, G.210, I.211, G.212, K.213, T.214, A.215 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:I.182, C:G.210, C:I.211, C:G.212, C:K.213, C:T.214, C:A.215 ANP.5: 8 residues within 4Å: Chain C: E.574, V.575, S.611, G.612, T.616, E.617, I.778, R.782 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:L.610, C:G.612, C:R.782 ANP.6: 10 residues within 4Å: Chain D: P.180, V.181, I.182, P.209, G.210, I.211, G.212, K.213, T.214, A.215 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:I.182, D:I.182, D:G.210, D:I.211, D:G.212, D:K.213, D:T.214, D:A.215 ANP.7: 8 residues within 4Å: Chain D: S.611, G.612, S.613, G.614, K.615, T.616, E.617, R.821 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.612, D:G.612, D:G.614, D:T.616, D:E.617 ANP.8: 10 residues within 4Å: Chain E: D.179, V.181, I.182, P.209, G.210, I.211, G.212, K.213, T.214, A.215 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:I.182, E:G.210, E:I.211, E:G.212, E:K.213, E:K.213, E:T.214, E:A.215 ANP.9: 11 residues within 4Å: Chain E: E.574, V.575, V.576, L.610, S.611, G.612, S.613, G.614, K.615, T.616, E.617 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:V.576, E:V.576, E:G.612, E:S.613, E:G.614, E:K.615, E:T.616, E:E.617 ANP.10: 11 residues within 4Å: Chain F: D.179, P.180, V.181, I.182, P.209, G.210, I.211, G.212, K.213, T.214, A.215 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:I.182, F:I.182, F:G.210, F:I.211, F:G.212, F:K.213, F:T.214, F:A.215 ANP.11: 11 residues within 4Å: Chain E: E.756 Chain F: E.574, V.575, V.576, S.611, G.612, S.613, G.614, K.615, T.616, E.617 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:V.576, F:V.576, F:S.611, F:G.612, F:G.614, F:T.616, F:E.617

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokom, A.L. et al., Spiral architecture of the Hsp104 disaggregase reveals the basis for polypeptide translocation. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-07-27

Peptides

Heat shock protein 104: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Heat shock protein 104