SMTL ID : 5kov.1 (3 other biounits)

Crystal structure of the human astrovirus 2 capsid protein spike in complex with a single chain variable fragment of an astrovirus neutralizing antibody at 3.24-A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain B: Q.88, N.90 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.90 NAG.2: 3 residues within 4Å: Chain C: K.45, Q.88, N.90 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.45, C:N.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bogdanoff, W.A. et al., Structure of a Human Astrovirus Capsid-Antibody Complex and Mechanistic Insights into Virus Neutralization. J. Virol. (2017)

Release Date

2016-11-09

Peptides

Capsid polyprotein VP90: AD
PL-2 scFv chain: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
C

C
E

Capsid polyprotein VP90

PL-2 scFv chain

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