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SMTL ID : 5kpg.1
Pavine N-methyltransferase in complex with S-adenosylhomocysteine pH 7
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.60 Å
Oligo State
homo-dimer
Ligands
2 x
SAH
:
S-ADENOSYL-L-HOMOCYSTEINE
(Non-covalent)
SAH.1:
17 residues within 4Å:
Chain A:
K.136
,
F.137
,
S.138
,
G.176
,
C.177
,
G.178
,
S.181
,
N.200
,
Q.204
,
E.225
,
D.226
,
V.227
,
T.228
,
V.242
,
A.243
,
L.244
,
H.247
23
PLIP interactions
:
23 interactions with chain A
Hydrogen bonds:
A:F.137
,
A:S.138
,
A:G.176
,
A:S.181
,
A:N.200
,
A:Q.204
,
A:D.226
,
A:V.227
,
A:T.228
Water bridges:
A:L.135
,
A:L.135
,
A:K.136
,
A:G.178
,
A:H.179
,
A:L.182
,
A:T.199
,
A:T.199
,
A:N.200
,
A:N.200
,
A:N.200
,
A:N.200
,
A:V.242
Salt bridges:
A:K.136
SAH.2:
17 residues within 4Å:
Chain B:
K.136
,
F.137
,
S.138
,
G.176
,
C.177
,
G.178
,
S.181
,
N.200
,
Q.204
,
E.225
,
D.226
,
V.227
,
T.228
,
V.242
,
A.243
,
L.244
,
H.247
17
PLIP interactions
:
17 interactions with chain B
Hydrogen bonds:
B:F.137
,
B:S.138
,
B:G.176
,
B:S.181
,
B:N.200
,
B:Q.204
,
B:D.226
,
B:D.226
,
B:V.227
,
B:T.228
,
B:V.242
Water bridges:
B:K.136
,
B:H.179
,
B:L.182
,
B:N.200
,
B:V.242
Salt bridges:
B:K.136
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Torres, M.A. et al., Structural and Functional Studies of Pavine N-Methyltransferase from Thalictrum flavum Reveal Novel Insights into Substrate Recognition and Catalytic Mechanism. J.Biol.Chem. (2016)
Release Date
2016-09-07
Peptides
Pavine N-methyltransferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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Chain
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Rainbow
2° Structure
Bfactor
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Pavine N-methyltransferase
Related Entries With Identical Sequence
5kn4.1
|
5koc.1
|
5kok.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme