SMTL ID : 5kpr.1

PANK3-AMPPNP-Pantothenate complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: E.146 Ligands: ANP.2 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain B: E.146 Ligands: ANP.6 No protein-ligand interaction detected (PLIP)

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 21 residues within 4Å: Chain A: G.27, G.28, T.29, L.30, K.32, E.146, G.199, S.200, G.201, G.223, G.224, F.239, E.240, G.329, N.330, F.331, R.333 Chain B: I.261 Ligands: MG.1, EDO.3, PAU.4 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:G.28, A:T.29, A:L.30, A:K.32, A:R.94, A:G.199, A:S.200, A:S.200, A:G.201, A:G.223, A:E.240, A:N.330, A:N.330, A:F.331, A:R.333 Water bridges: A:E.146, A:E.146, A:N.197, A:N.197, A:N.197, A:G.199, A:R.333, A:G.363 Salt bridges: A:K.32 pi-Stacking: A:F.239 ANP.6: 21 residues within 4Å: Chain A: I.261 Chain B: G.27, G.28, T.29, L.30, K.32, E.146, G.199, S.200, G.201, G.223, G.224, F.239, E.240, G.329, N.330, F.331, R.333 Ligands: MG.5, EDO.7, PAU.8 26 PLIP interactions: 26 interactions with chain B Hydrogen bonds: B:G.28, B:T.29, B:L.30, B:K.32, B:R.94, B:G.199, B:S.200, B:S.200, B:G.201, B:G.223, B:E.240, B:N.330, B:N.330, B:F.331, B:R.333 Water bridges: B:T.29, B:E.146, B:E.146, B:N.197, B:N.197, B:N.197, B:G.199, B:R.333, B:G.363 Salt bridges: B:K.32 pi-Stacking: B:F.239

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: L.30, T.69, I.71, R.94, F.95, P.96 Ligands: ANP.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.94, A:R.94 Water bridges: A:R.94, A:R.333 EDO.7: 7 residues within 4Å: Chain B: L.30, T.69, I.71, R.94, F.95, P.96 Ligands: ANP.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.94, B:R.94 Water bridges: B:R.94, B:R.333

2 x PAU: PANTOTHENOIC ACID(Non-covalent)

PAU.4: 12 residues within 4Å: Chain A: E.146, G.201, V.202, S.203, R.215, G.218, T.219, S.220 Chain B: Y.266, V.276, A.277 Ligands: ANP.2 11 PLIP interactions: 1 interactions with chain B, 10 interactions with chain A Hydrogen bonds: B:A.277, A:G.201, A:V.202, A:S.203, A:S.203, A:R.215 Water bridges: A:E.146, A:R.215, A:S.220, A:S.220 Salt bridges: A:R.215 PAU.8: 12 residues within 4Å: Chain A: Y.266, V.276, A.277 Chain B: E.146, G.201, V.202, S.203, R.215, G.218, T.219, S.220 Ligands: ANP.6 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.201, B:V.202, B:S.203, B:S.203, B:R.215, A:A.277 Water bridges: B:R.215, B:S.220, B:S.220 Salt bridges: B:R.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Subramanian, C. et al., Allosteric Regulation of Mammalian Pantothenate Kinase. J.Biol.Chem. (2016)

Release Date

2016-08-31

Peptides

Pantothenate kinase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pantothenate kinase 3

Related Entries With Identical Sequence