SMTL ID : 5kpt.1

PANK3-AMPPNP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: K.32 Ligands: ANP.2, EDO.3 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: K.32 Ligands: ANP.5, EDO.6 No protein-ligand interaction detected (PLIP)

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 21 residues within 4Å: Chain A: G.27, G.28, T.29, L.30, K.32, I.198, G.199, S.200, G.201, G.223, G.224, L.227, F.239, E.240, G.329, N.330, F.331, R.333 Chain B: I.261 Ligands: MG.1, EDO.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.28, A:T.29, A:L.30, A:K.32, A:R.94, A:G.199, A:S.200, A:S.200, A:G.201, A:G.223, A:E.240, A:N.330, A:N.330, A:F.331, A:R.333 Water bridges: A:E.146, A:N.197 Salt bridges: A:K.32 pi-Stacking: A:F.239 ANP.5: 21 residues within 4Å: Chain A: I.261 Chain B: G.27, G.28, T.29, L.30, K.32, I.198, G.199, S.200, G.201, G.223, G.224, L.227, F.239, E.240, G.329, N.330, F.331, R.333 Ligands: MG.4, EDO.6 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:G.28, B:T.29, B:L.30, B:K.32, B:R.94, B:G.199, B:S.200, B:S.200, B:G.201, B:G.223, B:E.240, B:N.330, B:N.330, B:F.331, B:R.333 Water bridges: B:T.29, B:E.146, B:N.197 Salt bridges: B:K.32 pi-Stacking: B:F.239

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain A: E.146, N.197, G.199, S.200, G.201, V.202, S.203 Ligands: MG.1, ANP.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.146, A:G.199, A:G.201, A:S.203 Water bridges: A:N.197, A:N.197 EDO.6: 9 residues within 4Å: Chain B: E.146, N.197, G.199, S.200, G.201, V.202, S.203 Ligands: MG.4, ANP.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.146, B:G.199, B:G.201, B:S.203 Water bridges: B:N.197, B:N.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Subramanian, C. et al., Allosteric Regulation of Mammalian Pantothenate Kinase. J.Biol.Chem. (2016)

Release Date

2016-08-31

Peptides

Pantothenate kinase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pantothenate kinase 3

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