SMTL ID : 5kq8.1

PANK3-AMPPN complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x AN2: AMP PHOSPHORAMIDATE(Non-covalent)

AN2.1: 19 residues within 4Å: Chain A: G.27, G.28, T.29, L.30, K.32, I.198, G.199, S.200, G.223, G.224, L.227, F.239, E.240, G.329, N.330, F.331, R.333 Ligands: MG.2, EDO.3 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.28, A:T.29, A:T.29, A:L.30, A:K.32, A:R.94, A:G.199, A:S.200, A:S.200, A:G.223, A:E.240, A:N.330, A:N.330, A:F.331, A:R.333 Water bridges: A:D.25, A:D.25, A:G.201, A:R.333, A:G.363 Salt bridges: A:K.32 pi-Stacking: A:F.239 AN2.4: 19 residues within 4Å: Chain B: G.27, G.28, T.29, L.30, K.32, I.198, G.199, S.200, G.223, G.224, L.227, F.239, E.240, G.329, N.330, F.331, R.333 Ligands: MG.5, EDO.6 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:G.28, B:T.29, B:L.30, B:K.32, B:R.94, B:G.199, B:S.200, B:S.200, B:G.223, B:E.240, B:N.330, B:N.330, B:F.331, B:R.333 Water bridges: B:D.25, B:D.25, B:T.29, B:G.201, B:R.333, B:G.363 Salt bridges: B:K.32 pi-Stacking: B:F.239

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.146 Ligands: AN2.1 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain B: E.146 Ligands: AN2.4 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: L.30, T.69, I.71, R.94, F.95, P.96 Ligands: AN2.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.94 Water bridges: A:E.240 EDO.6: 7 residues within 4Å: Chain B: L.30, T.69, I.71, R.94, F.95, P.96 Ligands: AN2.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.94 Water bridges: B:E.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Subramanian, C. et al., Allosteric Regulation of Mammalian Pantothenate Kinase. J.Biol.Chem. (2016)

Release Date

2016-08-31

Peptides

Pantothenate kinase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pantothenate kinase 3

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