SMTL ID : 5kqr.1

Structure of NS5 methyltransferase from Zika virus bound to S-adenosylmethionine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 19 residues within 4Å: Chain A: S.58, G.60, G.83, C.84, G.85, G.87, G.88, W.89, T.106, K.107, H.112, E.113, V.132, D.133, V.134, F.135, D.148, I.149 Ligands: CL.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.58, A:C.84, A:G.87, A:G.88, A:W.89, A:T.106, A:K.107, A:H.112, A:E.113, A:E.113, A:D.133, A:D.133, A:V.134 Water bridges: A:D.81, A:G.83, A:R.86, A:S.90 Salt bridges: A:E.113, A:D.148

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: R.39, R.43, S.58, R.59, R.86 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.59 Salt bridges: A:R.39, A:R.43, A:R.59, A:R.86

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: I.149, G.150, E.151 Ligands: SAM.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coloma, J. et al., Structures of NS5 Methyltransferase from Zika Virus. Cell Rep (2016)

Release Date

2016-09-14

Peptides

Methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyltransferase

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