SMTL ID : 5krb.1

GCNF DNA Binding Domain - Oct4 DR0 Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain B: C.4, I.6, C.7, D.9, C.21, C.24, R.53 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.4, B:C.7, B:C.21, B:C.24 ZN.2: 5 residues within 4Å: Chain B: C.40, K.44, C.46, C.56, C.59 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.40, B:C.46, B:C.56, B:C.59 ZN.3: 7 residues within 4Å: Chain D: C.4, I.6, C.7, D.9, C.21, C.24, R.53 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.4, D:C.7, D:C.21, D:C.24 ZN.4: 7 residues within 4Å: Chain D: C.40, R.42, K.44, C.46, C.56, Y.58, C.59 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.40, D:C.46, D:C.56, D:C.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weikum, E.R. et al., A Structural Investigation into Oct4 Regulation by Orphan Nuclear Receptors, Germ Cell Nuclear Factor (GCNF), and Liver Receptor Homolog-1 (LRH-1). J. Mol. Biol. (2016)

Release Date

2016-11-09

Peptides

Nuclear receptor subfamily 6 group A member 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

D
G

Nuclear receptor subfamily 6 group A member 1