SMTL ID : 5krp.1

Frutapin, a lectin from Artocarpus incisa: Cloning, Expressing and Structural Analysis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-tetramer

Ligands

13 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: G.118, T.119, Y.120 Chain B: Y.83, G.118, T.119, Y.120 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.118, A:Y.120, B:G.118, B:Y.120 GOL.2: 4 residues within 4Å: Chain A: N.17, W.19, K.56, H.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.57 Water bridges: A:N.17, A:T.58 GOL.3: 8 residues within 4Å: Chain A: G.15, G.16, L.90, T.94, G.138, D.139, L.140, D.142 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.138, A:D.139, A:L.140, A:L.140 Water bridges: A:D.142 GOL.4: 5 residues within 4Å: Chain B: F.76, N.127, G.128, L.150 Chain D: M.1 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.127, B:G.128, B:L.150, B:L.150 GOL.5: 7 residues within 4Å: Chain B: G.15, G.16, T.94, G.138, D.139, L.140, D.142 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.16, B:G.138, B:D.139, B:L.140, B:L.140 GOL.6: 5 residues within 4Å: Chain A: M.1 Chain C: E.126, N.127, G.128, L.129 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.126, C:G.128 GOL.7: 3 residues within 4Å: Chain C: P.51, F.52, S.53 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.53, C:S.53 Water bridges: C:S.53 GOL.8: 6 residues within 4Å: Chain C: P.86, F.87, S.88, R.98, E.115, D.117 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.88, C:S.88, C:R.98, C:R.98, C:E.115 GOL.9: 4 residues within 4Å: Chain C: L.90, A.91, T.92 Ligands: GOL.11 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.91, C:T.92, C:T.92 GOL.10: 3 residues within 4Å: Chain C: T.109, G.111, Y.113 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.111, C:G.111, C:Y.113 GOL.11: 9 residues within 4Å: Chain C: G.15, G.16, L.90, T.94, G.138, D.139, L.140, D.142 Ligands: GOL.9 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.16, C:G.138, C:D.139, C:L.140, C:L.140 GOL.12: 7 residues within 4Å: Chain C: G.118, T.119, Y.120 Chain D: Y.83, G.118, T.119, Y.120 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.118, C:Y.120, D:G.118, D:Y.120 Water bridges: C:Y.83 GOL.13: 8 residues within 4Å: Chain D: G.15, G.16, L.90, T.94, G.138, D.139, L.140, D.142 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.16, D:G.138, D:D.139, D:D.139, D:L.140, D:L.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Sousa, F.D. et al., Frutapin, a lectin fromArtocarpus incisa(breadfruit): cloning, expression and molecular insights. Biosci. Rep. (2017)

Release Date

2017-07-19

Peptides

Frutapin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Frutapin

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