SMTL ID : 5krs.1

HIV-1 Integrase Catalytic Core Domain in Complex with an Allosteric Inhibitor, 3-(1H-pyrrol-1-yl)-2-thiophenecarboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 2 residues within 4Å: Chain A: A.74, W.77 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.77

2 x 6XI: 3-pyrrol-1-ylthiophene-2-carboxylic acid(Non-covalent)

6XI.2: 11 residues within 4Å: Chain A: C.11, E.38, T.39, G.40, Q.41, T.43, S.65, N.66, T.68, S.69, V.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.40 Water bridges: A:Q.41, A:S.69 6XI.3: 6 residues within 4Å: Chain A: Q.114, A.115, E.116, H.117, T.120, M.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, D. et al., A New Class of Allosteric HIV-1 Integrase Inhibitors Identified by Crystallographic Fragment Screening of the Catalytic Core Domain. J.Biol.Chem. (2016)

Release Date

2016-09-28

Peptides

Integrase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Integrase

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