- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: G.102, R.103, G.104, D.407, S.474
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.407, A:D.407
- Water bridges: A:E.108
NA.10: 4 residues within 4Å:- Chain B: G.102, R.103, G.104, S.474
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.102
- Water bridges: B:E.108
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.4: 5 residues within 4Å:- Chain A: R.88, H.92, D.121
- Ligands: HEM.1, OXY.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.88
OXY.5: 4 residues within 4Å:- Chain A: W.91, H.92
- Ligands: HEM.1, OXY.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:W.91, A:H.92
- Water bridges: A:I.217, A:Y.218, A:Y.218
OXY.12: 5 residues within 4Å:- Chain B: R.88, H.92, D.121
- Ligands: HEM.9, OXY.13
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.88
- Water bridges: B:D.121
OXY.13: 4 residues within 4Å:- Chain B: W.91, H.92
- Ligands: HEM.9, OXY.12
3 PLIP interactions:3 interactions with chain B- Water bridges: B:I.217, B:Y.218, B:Y.218
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.6: 3 residues within 4Å:- Chain A: K.360, H.361, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.362
- Salt bridges: A:H.361, A:R.362
PO4.14: 3 residues within 4Å:- Chain B: K.360, H.361, R.362
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.362
- Water bridges: B:R.362
- Salt bridges: B:H.361, B:R.362
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.7: 5 residues within 4Å:- Chain A: P.120, A.123, A.270, T.303, S.304
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.303
MPD.8: 3 residues within 4Å:- Chain A: D.63, P.134, I.135
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.134
MPD.15: 7 residues within 4Å:- Chain B: P.120, A.123, A.270, V.273, W.289, T.303, S.304
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.270, B:V.273
- Hydrogen bonds: B:W.289
MPD.16: 4 residues within 4Å:- Chain B: V.231, W.342, L.370, F.374
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:V.231, B:W.342, B:L.370, B:F.374, B:F.374
- Water bridges: B:W.330, B:W.330
- 1 x NIZ: pyridine-4-carbohydrazide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C., Structure of the W153 variant of catalase-peroxidase of B. pseudomallei at 1.62 Angstroms. To be published
- Release Date
- 2017-07-12
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.62 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 1 x NIZ: pyridine-4-carbohydrazide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C., Structure of the W153 variant of catalase-peroxidase of B. pseudomallei at 1.62 Angstroms. To be published
- Release Date
- 2017-07-12
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B