- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: G.102, R.103, G.104, D.407, S.474
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.407, A:D.407
NA.11: 5 residues within 4Å:- Chain B: G.102, R.103, G.104, D.407, S.474
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.102
- Water bridges: B:E.108
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.4: 5 residues within 4Å:- Chain A: R.88, H.92, D.121
- Ligands: HEM.1, OXY.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.88, A:R.88
OXY.5: 4 residues within 4Å:- Chain A: W.91, H.92
- Ligands: HEM.1, OXY.4
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:W.91
- Water bridges: A:D.121, A:D.121, A:I.217, A:Y.218, A:Y.218, A:Y.218
OXY.13: 5 residues within 4Å:- Chain B: R.88, H.92, D.121
- Ligands: HEM.10, OXY.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.88, B:R.88, B:H.92
- Water bridges: B:D.121
OXY.14: 4 residues within 4Å:- Chain B: W.91, H.92
- Ligands: HEM.10, OXY.13
3 PLIP interactions:3 interactions with chain B- Water bridges: B:Y.218, B:Y.218, B:V.219
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.6: 3 residues within 4Å:- Chain A: K.360, H.361, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.362
- Salt bridges: A:H.361, A:R.362
PO4.15: 3 residues within 4Å:- Chain B: K.360, H.361, R.362
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.360, B:R.362
- Salt bridges: B:H.361, B:R.362
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.7: 5 residues within 4Å:- Chain A: P.120, A.270, V.273, T.303, G.304
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.273
- Hydrogen bonds: A:T.303
MPD.8: 3 residues within 4Å:- Chain A: D.63, P.134, I.135
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.134
- Water bridges: A:K.138
MPD.16: 6 residues within 4Å:- Chain B: P.120, A.123, L.189, W.289, T.303, G.304
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:P.120
- Hydrogen bonds: B:W.289
MPD.17: 4 residues within 4Å:- Chain B: V.231, W.342, L.370, F.374
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:V.231, B:W.342, B:L.370, B:F.374, B:F.374
- Water bridges: B:E.329, B:W.330, B:W.330, B:W.330
- 2 x NIZ: pyridine-4-carbohydrazide(Non-covalent)
NIZ.9: 11 residues within 4Å:- Chain A: R.103, E.108, E.178, D.179, V.180, G.473, S.474, Q.602, L.603, T.605
- Ligands: CL.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.103, A:R.103, A:E.178, A:Q.602
- Water bridges: A:G.104
NIZ.18: 11 residues within 4Å:- Chain B: R.103, E.108, E.178, D.179, V.180, G.473, S.474, Q.602, L.603, T.605
- Ligands: CL.12
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.103, B:R.103, B:E.178, B:Q.602
- Water bridges: B:G.104
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C., Structure of the S324G variant of catalase-peroxidase of B. pseudomallei treated with isoniazid at 1.87 Angstroms. To be published
- Release Date
- 2017-07-12
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x NIZ: pyridine-4-carbohydrazide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C., Structure of the S324G variant of catalase-peroxidase of B. pseudomallei treated with isoniazid at 1.87 Angstroms. To be published
- Release Date
- 2017-07-12
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B