SMTL ID : 5ku1.1

hMiro1 EF hand and cGTPase domains in the GDP-bound state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: V.250, K.251, N.252, C.253, G.254, K.255, S.256, G.257, L.267, K.271, K.352, D.354, L.355, T.382, C.383, N.384 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.252, A:C.253, A:G.254, A:K.255, A:S.256, A:G.257, A:K.271, A:K.271, A:K.352, A:K.352, A:T.382, A:C.383, A:N.384, A:N.384 Salt bridges: A:K.255, A:D.354

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.21, D.23, D.25, T.27, E.32 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.21, A:D.23, A:D.25, A:T.27, A:E.32 MG.3: 5 residues within 4Å: Chain A: D.141, D.143, D.145, A.147, E.152 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.141, A:D.143, A:D.145, A:A.147, A:E.152

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: K.251, K.255, S.301, E.302 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klosowiak, J.L. et al., Structural insights into Parkin substrate lysine targeting from minimal Miro substrates. Sci Rep (2016)

Release Date

2016-09-21

Peptides

Mitochondrial Rho GTPase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitochondrial Rho GTPase 1

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