SMTL ID : 5ku8.2 (1 other biounit)

Crystal structure of CK2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.76, R.79, R.154, N.188, V.191 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.188 Water bridges: A:R.154, A:N.188 Salt bridges: A:K.76, A:R.79, A:R.154 SO4.2: 3 residues within 4Å: Chain A: K.228, H.233, R.243 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.233 Water bridges: A:K.228, A:H.233, A:R.243 Salt bridges: A:K.228, A:R.243 SO4.3: 2 residues within 4Å: Chain A: W.32, K.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.32 Water bridges: A:V.30 Salt bridges: A:K.78, A:K.101 SO4.4: 5 residues within 4Å: Chain A: R.277, K.278, R.279, E.281, R.282 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.279 Salt bridges: A:R.279, A:R.282

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: K.157, H.159, S.193, Y.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.159, A:S.193 EDO.6: 6 residues within 4Å: Chain A: P.3, E.186, D.204, Y.205, Q.206, M.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.204, A:Q.206 EDO.7: 4 residues within 4Å: Chain A: K.43, L.44, G.45, R.46 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.43 EDO.8: 5 residues within 4Å: Chain A: K.228, F.231, F.232, R.243, V.247 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.228 EDO.9: 3 residues within 4Å: Chain A: G.47, K.48 Ligands: 6XK.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.48 Water bridges: A:Y.49 EDO.10: 3 residues within 4Å: Chain A: H.275, S.276, K.278 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.276, A:K.278 EDO.11: 7 residues within 4Å: Chain A: H.28, V.29, V.30, E.31, I.81, E.85, I.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.29, A:E.31, A:E.85 EDO.12: 4 residues within 4Å: Chain A: W.23, D.24, Y.25, E.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.24, A:E.26 EDO.13: 8 residues within 4Å: Chain A: Q.35, Y.38, L.40, V.66, V.100, D.102, P.103, A.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.35, A:Y.38, A:D.102 EDO.14: 4 residues within 4Å: Chain A: L.202, N.237, Y.238, F.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.202, A:N.237 EDO.15: 4 residues within 4Å: Chain A: Y.11, T.12, D.13, V.14 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.13, A:D.13, A:D.13, A:V.14 Water bridges: A:Y.11

1 x 6XK: ~{N}-[2-[(1~{S},2~{S})-2-(aminomethyl)cyclopropyl]-5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]phenyl]ethanamide(Non-covalent)

6XK.16: 18 residues within 4Å: Chain A: R.42, L.44, R.46, G.47, S.50, V.52, V.65, K.67, I.94, F.112, E.113, H.114, V.115, N.117, M.162, I.173, D.174 Ligands: EDO.9 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.44, A:L.44, A:V.52, A:V.52, A:V.65, A:V.65, A:K.67, A:I.173 Hydrogen bonds: A:K.67, A:V.115, A:V.115, A:D.174, A:D.174, A:D.174 Water bridges: A:L.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferguson, A.D., Crystal structure of CK2. Not Published

Release Date

2017-11-08

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Casein kinase II subunit alpha

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