SMTL ID : 5kuh.1

GluK2EM with LY466195

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x LY5: (3S,4aR,6S,8aR)-6-{[(2S)-2-carboxy-4,4-difluoropyrrolidin-1-yl]methyl}decahydroisoquinoline-3-carboxylic acid(Non-covalent)

LY5.1: 10 residues within 4Å: Chain A: Y.457, P.485, L.486, T.487, V.534, G.537, S.538, T.539, M.586, E.587 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.534 Hydrogen bonds: A:T.487, A:S.538, A:T.539, A:E.587 LY5.2: 10 residues within 4Å: Chain B: Y.457, P.485, L.486, T.487, V.534, G.537, S.538, T.539, M.586, E.587 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.534 Hydrogen bonds: B:P.485, B:T.487, B:S.538, B:T.539, B:E.587 LY5.3: 10 residues within 4Å: Chain C: Y.457, P.485, L.486, T.487, V.534, G.537, S.538, T.539, M.586, E.587 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:V.534 Hydrogen bonds: C:T.487, C:S.538, C:T.539, C:E.587 LY5.4: 10 residues within 4Å: Chain D: Y.457, P.485, L.486, T.487, V.534, G.537, S.538, T.539, M.586, E.587 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:V.534 Hydrogen bonds: D:P.485, D:T.487, D:S.538, D:T.539, D:E.587

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyerson, J.R. et al., Structural basis of kainate subtype glutamate receptor desensitization. Nature (2016)

Release Date

2016-09-07

Peptides

Glutamate receptor ionotropic, kainate 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glutamate receptor ionotropic, kainate 2