SMTL ID : 5kvh.1

Crystal structure of human apoptosis-inducing factor with W196A mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 39 residues within 4Å: Chain A: I.61, G.62, G.63, G.64, T.65, A.66, A.67, V.86, S.87, E.88, D.89, R.96, P.97, L.99, S.100, K.101, K.155, K.156, V.157, A.183, T.184, G.185, G.186, F.208, R.209, L.235, E.238, N.327, L.330, G.361, D.362, E.377, H.378, H.379, D.380, A.382, F.406, W.407, S.408 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:R.96, A:F.208, A:R.209, A:L.235 Hydrogen bonds: A:G.62, A:G.63, A:T.65, A:T.65, A:T.65, A:A.66, A:E.88, A:E.88, A:R.96, A:R.96, A:K.101, A:V.157, A:V.157, A:D.362, A:E.377, A:H.379, A:W.407, A:W.407 Water bridges: A:G.64, A:A.67, A:R.96, A:G.185, A:G.186, A:R.209, A:H.379, A:D.380, A:A.382, A:S.408 Salt bridges: A:R.96, A:R.209 FAD.3: 39 residues within 4Å: Chain B: I.61, G.62, G.63, G.64, T.65, A.66, A.67, V.86, S.87, E.88, D.89, R.96, P.97, L.99, S.100, K.101, K.155, K.156, V.157, A.183, T.184, G.185, G.186, F.208, R.209, L.235, E.238, N.327, L.330, G.361, D.362, E.377, H.378, H.379, D.380, A.382, F.406, W.407, S.408 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:R.96, B:F.208, B:R.209, B:L.235 Hydrogen bonds: B:G.62, B:G.63, B:T.65, B:A.66, B:E.88, B:E.88, B:R.96, B:R.96, B:K.101, B:V.157, B:V.157, B:D.362, B:H.378, B:H.379, B:W.407 Water bridges: B:G.64, B:A.67, B:D.89, B:D.89, B:R.96, B:G.185, B:R.209, B:A.382 Salt bridges: B:R.96, B:R.209

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Y.271, L.272, W.275, F.432, Y.484, W.503 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brosey, C.A. et al., Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor. Structure (2016)

Release Date

2016-11-16

Peptides

Apoptosis-inducing factor 1, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Apoptosis-inducing factor 1, mitochondrial

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