SMTL ID : 5kvi.1

Crystal structure of monomeric human apoptosis-inducing factor with E413A/R422A/R430A mutations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 42 residues within 4Å: Chain A: I.61, G.62, G.63, G.64, T.65, A.66, A.67, V.86, S.87, E.88, D.89, R.96, P.97, L.99, S.100, K.101, K.155, K.156, V.157, A.183, T.184, G.185, G.186, F.208, R.209, K.210, L.235, E.238, N.327, E.329, L.330, G.361, D.362, A.363, E.377, H.378, H.379, D.380, A.382, F.406, W.407, S.408 37 PLIP interactions: 37 interactions with chain A Hydrophobic interactions: A:R.96, A:F.208, A:L.235 Hydrogen bonds: A:G.62, A:G.63, A:T.65, A:T.65, A:T.65, A:A.66, A:E.88, A:E.88, A:E.88, A:D.89, A:R.96, A:K.101, A:V.157, A:V.157, A:R.209, A:K.210, A:D.362, A:D.362, A:H.379, A:W.407, A:W.407 Water bridges: A:G.64, A:A.67, A:R.96, A:R.96, A:R.96, A:R.96, A:R.96, A:G.185, A:G.186, A:G.186, A:D.380, A:A.382 Salt bridges: A:R.96

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 13 residues within 4Å: Chain A: R.189, G.233, F.234, K.266, I.267, V.322, G.323, R.374, E.377, H.378, F.406, A.418, V.422 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.189 Water bridges: A:G.233, A:F.234, A:L.235, A:K.266, A:L.324, A:R.374, A:R.374, A:E.377 Salt bridges: A:K.266, A:E.377

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: A.337, A.346, V.347, N.348, A.353, R.373 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.353, A:R.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brosey, C.A. et al., Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor. Structure (2016)

Release Date

2016-11-16

Peptides

Apoptosis-inducing factor 1, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Apoptosis-inducing factor 1, mitochondrial