SMTL ID : 5kvm.1

Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

1 x THR- TYR- PHE- ALA- VAL- LEU- MET- VAL- SER: Adhesion G-protein coupled receptor G1(Non-covalent)

THR-TYR-PHE-ALA-VAL-LEU-MET-VAL-SER.1: 30 residues within 4Å: Chain A: L.182, V.264, F.266, F.272, S.278, Q.279, V.280, L.281, K.284, V.285, L.286, G.287, I.288, V.289, L.304, F.306, N.314, V.315, T.316, L.317, Q.318, C.319, V.320, F.321, W.322, W.334, C.350, C.352, H.354, L.355 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:F.266, A:F.272, A:V.280, A:L.281, A:I.288, A:L.304, A:F.306, A:V.315, A:V.320, A:W.334, A:L.355 Hydrogen bonds: A:Q.279, A:L.281, A:L.286, A:L.286, A:I.288, A:I.288, A:T.316, A:T.316, A:Q.318, A:Q.318, A:V.320, A:V.320, A:W.322, A:L.355, A:L.355

1 x NAG- NAG- BMA- BMA: beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA.2: 9 residues within 4Å: Chain A: R.6, C.8, H.62, C.64, R.77, G.79, S.112, S.114, N.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.10

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 7 residues within 4Å: Chain A: T.198, S.200, E.202, N.207, T.209, W.211, Q.227 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.198, A:W.211

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: N.12, T.14, L.60 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.60

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 10 residues within 4Å: Chain A: A.175, I.178, S.179, L.182, L.271, W.322, E.324, S.330, T.331, G.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.175, A:S.330, A:G.332

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salzman, G.S. et al., Structural Basis for Regulation of GPR56/ADGRG1 by Its Alternatively Spliced Extracellular Domains. Neuron (2016)

Release Date

2016-09-28

Peptides

Adhesion G-protein coupled receptor G1: A
FN3 monobody alpha5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Adhesion G-protein coupled receptor G1

FN3 monobody alpha5