SMTL ID : 5kxa.1

Selective Inhibition of Autotaxin is Effective in Mouse Models of Liver Fibrosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 7 residues within 4Å: Chain A: L.221, S.225, P.523, N.524, N.525, L.746, H.832 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.523, A:N.525

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: D.312, H.316, H.475 Ligands: PO4.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.312, A:D.312, A:H.316, A:H.475 ZN.3: 5 residues within 4Å: Chain A: D.172, T.210, D.359, H.360 Ligands: PO4.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.172, A:D.172, A:T.210, A:D.359, A:H.360

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: D.740, D.742, D.744, L.746, H.747, D.748 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.740, A:D.742, A:D.744, A:L.746, A:D.748

1 x 6Y7: 3-[6-chloranyl-2-cyclopropyl-1-(1-ethylpyrazol-4-yl)-7-fluoranyl-indol-3-yl]sulfanyl-2-fluoranyl-benzoic acid(Non-covalent)

6Y7.5: 13 residues within 4Å: Chain A: L.79, S.82, F.211, L.214, Y.215, K.249, F.250, H.252, W.255, W.261, F.275, W.276, V.278 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.79, A:K.249, A:F.250, A:W.255 Hydrogen bonds: A:V.278 Salt bridges: A:K.249 pi-Stacking: A:W.255, A:W.255, A:W.255, A:W.261

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 9 residues within 4Å: Chain A: D.172, T.210, N.231, L.244, D.312, H.316, H.475 Ligands: ZN.2, ZN.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.210, A:N.231, A:N.231 Salt bridges: A:H.316, A:H.475

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bain, G. et al., Selective Inhibition of Autotaxin Is Efficacious in Mouse Models of Liver Fibrosis. J. Pharmacol. Exp. Ther. (2017)

Release Date

2016-11-09

Peptides

Ectonucleotide pyrophosphatase/phosphodiesterase family member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ectonucleotide pyrophosphatase/phosphodiesterase family member 2