SMTL ID : 5kxq.2 (1 other biounit)

mouse POFUT1 in complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: D.4, A.6, N.36, R.75 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.4, A:N.36, A:R.75, A:R.75 NAG.2: 2 residues within 4Å: Chain A: E.94, N.134 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.134, A:N.134, A:N.134 NAG.5: 4 residues within 4Å: Chain B: D.4, A.6, N.36, R.75 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.4, B:N.36, B:R.75, B:R.75 NAG.6: 2 residues within 4Å: Chain B: E.94, N.134 3 PLIP interactions: 3 interactions with chain B Water bridges: B:N.134, B:N.134, B:N.134

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 16 residues within 4Å: Chain A: R.17, F.18, G.19, N.20, H.212, R.214, W.219, A.283, T.284, D.285, P.308, A.311, D.314, S.330, S.331, F.332 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.17, A:F.18, A:G.19, A:N.20, A:P.308, A:D.314, A:S.331, A:S.331, A:S.331, A:F.332 Water bridges: A:R.17, A:R.17, A:R.214, A:T.284 Salt bridges: A:R.214, A:D.314 pi-Stacking: A:F.332, A:F.332 GDP.7: 16 residues within 4Å: Chain B: R.17, F.18, G.19, N.20, H.212, R.214, W.219, A.283, T.284, D.285, P.308, A.311, D.314, S.330, S.331, F.332 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:R.17, B:F.18, B:G.19, B:N.20, B:T.284, B:P.308, B:S.331, B:S.331, B:F.332 Water bridges: B:R.17, B:R.214, B:S.331, B:S.331 Salt bridges: B:R.214, B:D.314 pi-Stacking: B:F.332, B:F.332

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Chain A: Q.320 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.320, A:Q.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1. Nat. Chem. Biol. (2017)

Release Date

2017-05-17

Peptides

GDP-fucose protein O-fucosyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

GDP-fucose protein O-fucosyltransferase 1

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