SMTL ID : 5ky0.1

mouse POFUT1 in complex with mouse Notch1 EGF12(D464G) and GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: D.6, A.8, N.38, R.77 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.6, A:N.38, A:R.77, A:R.77 NAG.2: 2 residues within 4Å: Chain A: E.96, N.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.136

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 17 residues within 4Å: Chain A: R.19, F.20, G.21, N.22, H.214, R.216, W.221, A.285, T.286, D.287, K.309, P.310, A.313, D.316, S.332, S.333, F.334 24 PLIP interactions: 1 interactions with chain B, 23 interactions with chain A Water bridges: B:T.15, A:R.216, A:R.216, A:R.216, A:T.286, A:D.316, A:S.333 Hydrogen bonds: A:R.19, A:R.19, A:F.20, A:G.21, A:N.22, A:N.22, A:H.214, A:T.286, A:P.310, A:S.332, A:S.333, A:S.333, A:F.334 Salt bridges: A:R.216, A:D.316 pi-Stacking: A:F.334, A:F.334

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: F.141, T.142, I.144, Q.153, R.157 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.142, A:T.142, A:R.157 GOL.5: 7 residues within 4Å: Chain A: K.35, L.36, N.38, Y.75, H.76, R.77 Ligands: NAG.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.35, A:H.76 Water bridges: A:K.35, A:R.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1. Nat. Chem. Biol. (2017)

Release Date

2017-05-17

Peptides

GDP-fucose protein O-fucosyltransferase 1: A
Neurogenic locus notch homolog protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GDP-fucose protein O-fucosyltransferase 1

Neurogenic locus notch homolog protein 1

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