SMTL ID : 5ky3.1

mouse POFUT1 in complex with mouse Factor VII EGF1 mutant (T101A) and GDP-fucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: D.6, A.8, N.38, R.77 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.6, A:N.38, A:R.77, A:R.77 Water bridges: A:N.38 NAG.2: 2 residues within 4Å: Chain A: E.96, N.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.136

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: F.141, T.142, I.144, Q.153, R.157 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.142, A:T.142, A:R.157

1 x GFB: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE(Non-covalent)

GFB.4: 25 residues within 4Å: Chain A: G.18, R.19, F.20, G.21, N.22, H.214, R.216, D.220, W.221, A.224, M.238, A.285, T.286, D.287, P.310, A.313, D.316, S.332, S.333, F.334 Chain B: G.13, G.14, A.15, F.26, L.28 23 PLIP interactions: 22 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.19, A:R.19, A:R.19, A:F.20, A:G.21, A:N.22, A:N.22, A:R.216, A:D.220, A:T.286, A:P.310, A:S.332, A:S.333, A:S.333, A:F.334 Water bridges: A:T.286, A:D.316 Salt bridges: A:R.216, A:R.216, A:D.316 pi-Stacking: A:F.334, A:F.334 Hydrophobic interactions: B:F.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1. Nat. Chem. Biol. (2017)

Release Date

2017-05-17

Peptides

GDP-fucose protein O-fucosyltransferase 1: A
Coagulation factor VII: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GDP-fucose protein O-fucosyltransferase 1

Coagulation factor VII

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