SMTL ID : 5ky8.1

mouse POFUT1 in complex with O-glucosylated mouse Notch1 EGF12 mutant (D464G) and GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: D.6, L.7, A.8, N.38, R.77 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.6, A:A.8, A:N.38, A:R.77, A:R.77 Water bridges: A:D.6

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: R.19, F.20, G.21, N.22, H.214, R.216, W.221, A.285, T.286, D.287, K.309, P.310, A.313, D.316, S.332, S.333, F.334 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:R.19, A:F.20, A:G.21, A:N.22, A:N.22, A:H.214, A:R.216, A:T.286, A:P.310, A:S.332, A:S.333, A:S.333, A:F.334 Water bridges: A:R.19, A:R.216, A:D.316, A:D.316 Salt bridges: A:R.216, A:D.316 pi-Stacking: A:F.334, A:F.334

1 x BGC: beta-D-glucopyranose(Post Translational Modification)

BGC.3: 8 residues within 4Å: Chain A: V.105, R.109 Chain B: E.4, I.6, S.7, P.9, F.23, Y.35 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.4, B:Y.35, A:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1. Nat. Chem. Biol. (2017)

Release Date

2017-05-17

Peptides

GDP-fucose protein O-fucosyltransferase 1: A
Neurogenic locus notch homolog protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GDP-fucose protein O-fucosyltransferase 1

Neurogenic locus notch homolog protein 1

Related Entries With Identical Sequence