SMTL ID : 5kze.1 (1 other biounit)

N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: A.11, Y.44, G.47, S.48, S.49, Y.137, K.165 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.48, A:S.49, A:Y.137 Water bridges: A:Y.44, A:G.47, A:K.165 Salt bridges: A:K.165 SO4.3: 7 residues within 4Å: Chain B: A.11, G.47, S.48, S.49, Y.137, K.165, I.206 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.48, B:S.49, B:Y.137, B:Y.137 Water bridges: B:S.208 Salt bridges: B:K.165 SO4.5: 8 residues within 4Å: Chain C: A.11, Y.44, G.47, S.48, S.49, Y.137, K.165, I.206 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.48, C:S.49, C:Y.137, C:Y.137 Salt bridges: C:K.165 SO4.7: 7 residues within 4Å: Chain D: A.11, Y.44, G.47, S.48, S.49, Y.137, K.165 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.48, D:S.49, D:S.49 Water bridges: D:T.167 Salt bridges: D:K.165

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: S.49, G.189, F.190, D.191, E.192, S.208, I.251 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.191, A:D.191 Water bridges: A:S.49, A:S.208 GOL.4: 6 residues within 4Å: Chain B: G.189, F.190, D.191, E.192, S.208, I.251 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.191, B:D.191, B:E.192 GOL.6: 7 residues within 4Å: Chain C: S.49, G.189, F.190, D.191, E.192, S.208, I.251 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.49, C:S.208 Water bridges: C:S.208 GOL.8: 9 residues within 4Å: Chain D: I.139, T.167, G.189, F.190, D.191, E.192, I.243, L.247, I.251 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.189, D:E.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

North, R.A. et al., Structure and inhibition of N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus. FEBS Lett. (2016)

Release Date

2017-01-11

Peptides

N-acetylneuraminate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

D
H

N-acetylneuraminate lyase

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