SMTL ID : 5kzk.1

Crystal Structure of rRNA methyltransferase from Sinorhizobium meliloti

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 2 residues within 4Å: Chain A: H.40, E.43 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.40, A:E.43, A:E.43 CO.3: 2 residues within 4Å: Chain B: H.40, E.43 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.40, B:E.43, H2O.2

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: N.147, E.237, N.265, L.266 Chain B: R.153 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.147, A:N.265, A:L.266 Salt bridges: B:R.153 SO4.4: 6 residues within 4Å: Chain A: R.153, M.182 Chain B: N.147, E.237, N.265, L.266 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.147, B:N.265, B:L.266 Salt bridges: A:R.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dey, D. et al., Crystal Structure of rRNA methyltransferase from Sinorhizobium meliloti. To Be Published

Release Date

2017-08-02

Peptides

Probable RNA methyltransferase, TrmH family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable RNA methyltransferase, TrmH family

Related Entries With Identical Sequence