SMTL ID : 5l03.1

Crystal structure of 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE Synthase from BURKHOLDERIA PSEUDOMALLEI bound to L-tryptophan hydroxamate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-trimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.10, H.12, H.44 Ligands: 6ZB.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.10, A:H.12, A:H.44 ZN.3: 3 residues within 4Å: Chain B: D.10, H.12, H.44 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.10, B:D.10, B:H.12, B:H.44, H2O.9 ZN.4: 3 residues within 4Å: Chain C: D.10, H.12, H.44 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.10, C:H.12, C:H.44, H2O.16

1 x 6ZB: N-hydroxy-L-tryptophanamide(Non-covalent)

6ZB.2: 14 residues within 4Å: Chain A: D.10, H.12, G.35, H.36, S.37, H.44, I.59, G.60, F.63, S.64, D.65, L.78 Chain B: K.134 Ligands: ZN.1 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.59, A:F.63, A:L.78 Hydrogen bonds: A:H.36, A:S.37, A:F.63, B:K.134, B:K.134 Water bridges: A:D.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blain, J.M. et al., Synthesis and Characterization of the Burkholderia pseudomallei IspF Inhibitor L-tryptophan hydroxamate. To Be Published

Release Date

2017-11-08

Peptides

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase