SMTL ID : 5l0c.1 (1 other biounit)

Human metavinculin (residues 959-1134) in complex with PIP2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)

PIO.1: 6 residues within 4Å: Chain A: R.17, E.18, K.21, R.149, E.152, R.170 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.17, A:R.170 Salt bridges: A:K.21, A:K.21, A:R.149, A:R.149 PIO.3: 5 residues within 4Å: Chain B: R.17, E.18, K.21, W.22, R.170 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.17, B:R.170 Salt bridges: B:K.21, B:K.21, B:R.170

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: A.32, R.35, E.70 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chinthalapudi, K. et al., Differential lipid binding of vinculin isoforms promotes quasi-equivalent dimerization. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-08-31

Peptides

Vinculin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vinculin

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