SMTL ID : 5l0m.1

hLRH-1 DNA Binding Domain - 12bp Oct4 promoter complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.47, Q.51, C.53, C.63, Y.65, C.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.47, A:C.53, A:C.63, A:C.66 ZN.2: 7 residues within 4Å: Chain A: C.11, V.13, C.14, D.16, C.28, S.30, C.31 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:C.28, A:C.31

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain B: A.3, G.4, C.5 Chain C: T.10, A.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weikum, E.R. et al., A Structural Investigation into Oct4 Regulation by Orphan Nuclear Receptors, Germ Cell Nuclear Factor (GCNF), and Liver Receptor Homolog-1 (LRH-1). J. Mol. Biol. (2016)

Release Date

2016-11-09

Peptides

Nuclear receptor subfamily 5 group A member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor subfamily 5 group A member 2