SMTL ID : 5l0n.1

PKG I's Carboxyl Terminal Cyclic Nucleotide Binding Domain (CNB-B) in a complex with RP-cGMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: F.57, W.88, F.89, G.90, E.91, K.92 Ligands: 6ZA.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.88, A:G.90, A:E.91 Water bridges: A:W.88, A:K.92, A:K.92

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.31, H.122, L.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.31, A:H.122 EDO.3: 4 residues within 4Å: Chain A: R.69, L.80, T.101 Ligands: 6ZA.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.69 EDO.4: 4 residues within 4Å: Chain A: R.53, G.54, D.55, D.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.55, A:D.55, A:D.98

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 2 residues within 4Å: Chain A: E.13, F.14 No protein-ligand interaction detected (PLIP)

1 x 6ZA: 2-amino-9-[(2R,4aR,6R,7R,7aS)-2,7-dihydroxy-2-sulfanylidenetetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-3,9-dihydro-6H-purin-6-one(Non-covalent)

6ZA.6: 18 residues within 4Å: Chain A: I.48, V.67, R.69, L.80, R.81, L.83, F.89, G.90, E.91, K.92, A.93, V.99, R.100, T.101, A.102, V.104 Ligands: SO4.1, EDO.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:R.81, A:R.81, A:G.90, A:K.92, A:V.99, A:R.100, A:T.101, A:T.101, A:T.101, A:T.101, A:A.102 Water bridges: A:R.69, A:R.69, A:W.88, A:E.91, A:E.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campbell, J.C. et al., Structure of PKG I CNB-B bound to RP-cGMP. To Be Published

Release Date

2017-08-02

Peptides

cGMP-dependent protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cGMP-dependent protein kinase 1

Related Entries With Identical Sequence