SMTL ID : 5l0u.1

human POGLUT1 in complex with EGF(+) and UDP-phosphono-glucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: S.23, Q.24, N.25, S.27 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.25, A:S.27 Water bridges: A:Q.24, A:N.25 NAG.2: 5 residues within 4Å: Chain A: N.176, T.178, Y.180, D.205, Y.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.176, A:D.205, A:Y.237 NAG.3: 2 residues within 4Å: Chain A: Y.344, N.345 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.345 Water bridges: A:N.345

1 x 660: [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-[[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]methyl]phosphinic acid(Non-covalent)

660.4: 25 residues within 4Å: Chain A: D.105, F.122, P.143, V.145, I.148, Y.149, L.153, R.182, G.183, S.184, T.186, R.190, T.209, N.211, D.228, V.229, L.231, H.234, G.245, V.246, A.247, A.248, S.249, F.250, R.251 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:Y.149, A:S.184, A:S.184, A:R.190, A:R.190, A:D.228, A:V.229, A:V.229, A:L.231, A:V.246, A:A.247, A:A.247, A:S.249, A:F.250, A:R.251, A:R.251 Water bridges: A:D.105, A:D.105, A:N.211, A:R.251 Salt bridges: A:R.190, A:R.251

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 8 residues within 4Å: Chain B: D.3, I.4, D.5, E.6, N.20, T.21, G.23, S.24 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:I.4, B:E.6, B:T.21, B:S.24, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Structural basis of Notch O-glucosylation and O-xylosylation by mammalian protein-O-glucosyltransferase 1 (POGLUT1). Nat Commun (2017)

Release Date

2017-08-09

Peptides

Protein O-glucosyltransferase 1: A
EGF(+): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein O-glucosyltransferase 1

EGF(+)

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