SMTL ID : 5l1x.2 (1 other biounit)

Structure of the Human Metapneumovirus Fusion Protein in the Postfusion Conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: N.61, R.64 Chain F: K.339 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 3 residues within 4Å: Chain B: N.242, S.244, T.246 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.242, B:T.246, B:T.246

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.3: 4 residues within 4Å: Chain F: N.242, S.244, T.245, T.246 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:T.245, F:T.246, F:T.246

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: R.22 Chain B: D.225, T.226, A.227 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.226, B:T.226, B:A.227 Salt bridges: A:R.22 SO4.7: 6 residues within 4Å: Chain C: R.22 Chain D: K.143, D.225, T.226, A.227 Chain F: K.213 5 PLIP interactions: 1 interactions with chain F, 3 interactions with chain D, 1 interactions with chain C Salt bridges: F:K.213, D:K.143, C:R.22 Hydrogen bonds: D:T.226, D:A.227

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain C: N.39, T.41 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.39 NAG.6: 4 residues within 4Å: Chain B: K.339, P.341 Chain D: N.61, R.64 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:N.61, D:R.64, D:R.64 Hydrophobic interactions: B:P.341 NAG.8: 4 residues within 4Å: Chain D: K.339 Chain F: K.60, N.61, R.64 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:K.60, F:K.60, F:N.61, F:R.64, F:R.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mas, V. et al., Engineering, Structure and Immunogenicity of the Human Metapneumovirus F Protein in the Postfusion Conformation. Plos Pathog. (2016)

Release Date

2016-08-24

Peptides

hMPV F2 subunit: ACE
hMPV F1 subunit: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

hMPV F2 subunit

hMPV F1 subunit

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