SMTL ID : 5l2x.1 (1 other biounit)

Crystal structure of human PrimPol ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)

DTP.1: 17 residues within 4Å: Chain A: R.76, Y.100, D.114, E.116, S.160, K.165, S.167, H.169, R.288, N.289, F.290, R.291, K.297 Chain B: T.3, C.4 Chain C: G.13 Ligands: CA.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.100, A:N.289 Hydrogen bonds: A:S.160, A:S.167, A:R.288, A:R.291 Water bridges: A:D.114, A:S.167, A:R.291, A:R.291 Salt bridges: A:K.165, A:K.165, A:K.165, A:H.169, A:R.291, A:R.291, A:K.297, A:K.297, A:K.297 pi-Cation interactions: A:R.76

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.114, E.116 Ligands: DTP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.114, A:D.114, A:E.116, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rechkoblit, O. et al., Structure and mechanism of human PrimPol, a DNA polymerase with primase activity. Sci Adv (2016)

Release Date

2016-11-23

Peptides

DNA-directed primase/polymerase protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-directed primase/polymerase protein

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