SMTL ID : 5l3c.1

Human LSD1/CoREST: LSD1 E379K mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.31 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: G.285, G.287, V.288, S.289, L.307, E.308, A.309, R.310, G.314, G.315, R.316, V.317, L.329, G.330, A.331, M.332, V.333, T.588, A.589, V.590, T.624, L.625, P.626, V.637, L.659, K.661, W.751, W.756, S.760, Y.761, G.800, E.801, A.809, T.810, V.811, A.814 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.659 Hydrogen bonds: A:S.286, A:V.288, A:S.289, A:S.289, A:A.309, A:R.310, A:G.314, A:R.316, A:A.331, A:M.332, A:V.333, A:V.333, A:V.590, A:V.590, A:T.624, A:E.801, A:V.811 Salt bridges: A:R.316, A:R.316 pi-Stacking: A:Y.761

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pilotto, S. et al., LSD1/KDM1A mutations associated to a newly described form of intellectual disability impair demethylase activity and binding to transcription factors. Hum.Mol.Genet. (2016)

Release Date

2016-05-04

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine-specific histone demethylase 1A

REST corepressor 1

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