SMTL ID : 5l4r.1

X-ray structure of the adduct between thaumatin and cisplatin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 4 residues within 4Å: Chain A: G.96, K.97, P.194, G.195 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.96, A:G.195 Water bridges: A:G.96, A:K.97 Salt bridges: A:K.97 TLA.2: 3 residues within 4Å: Chain A: R.29, E.35, S.36 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.29, A:R.29, A:S.36, A:S.36, A:S.36 Salt bridges: A:R.29

3 x 73M: bis(azanyl)-chloranyl-oxidanyl-platinum(Non-covalent)

73M.3: 5 residues within 4Å: Chain A: A.1, V.41, P.43, S.196 Ligands: CPT.10 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.40, A:N.93, A:S.196, A:S.196 73M.5: 1 residues within 4Å: Chain A: E.168 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.168, H2O.1 73M.9: 3 residues within 4Å: Chain A: R.82, P.83, T.150 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.82, A:R.82, A:P.83 Water bridges: A:N.146

8 x CPT: Cisplatin(Non-covalent)

CPT.4: 4 residues within 4Å: Chain A: P.83, K.106, C.149, T.150 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.153 CPT.6: 4 residues within 4Å: Chain A: K.49, F.80, E.89 Ligands: GOL.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.49 Water bridges: A:K.106 CPT.7: 4 residues within 4Å: Chain A: K.97, T.192, C.193, P.194 No protein-ligand interaction detected (PLIP) CPT.8: 1 residues within 4Å: Chain A: K.137 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.137, A:K.137 CPT.10: 2 residues within 4Å: Chain A: P.43 Ligands: 73M.3 No protein-ligand interaction detected (PLIP) CPT.11: 1 residues within 4Å: Chain A: K.67 No protein-ligand interaction detected (PLIP) CPT.12: 1 residues within 4Å: Chain A: K.139 No protein-ligand interaction detected (PLIP) CPT.13: 2 residues within 4Å: Chain A: K.19, D.21 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.19

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.14: 6 residues within 4Å: Chain A: E.89, D.101, I.105, F.181, V.184 Ligands: CPT.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Russo Krauss, I. et al., Cisplatin-Protein Interactions: Unexpected Drug Binding to N-Terminal Amine and Lysine Side Chains. Inorg.Chem. (2016)

Release Date

2016-12-07

Peptides

Thaumatin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thaumatin-1

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