SMTL ID : 5l50.1

Crystal structure of enzyme in purine metabolism

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-tetramer

Ligands

48 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: P.115, T.116, E.393, E.397, Y.453, G.457, L.459 Ligand excluded by PLIP GOL.2: 4 residues within 4Å: Chain A: T.166, F.169, Y.170, I.171 Ligand excluded by PLIP GOL.3: 6 residues within 4Å: Chain A: D.71, D.73, T.174, F.176, D.370, H.371 Ligand excluded by PLIP GOL.4: 8 residues within 4Å: Chain A: K.381, R.475, Y.476 Chain C: A.133, Y.134, R.163, S.471, R.475 Ligand excluded by PLIP GOL.5: 9 residues within 4Å: Chain A: F.302, D.303, L.304, I.305, Q.341, H.342, G.343, I.344, Y.346 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain A: D.271, Y.272, V.307, D.308, G.329, L.331 Ligand excluded by PLIP GOL.7: 7 residues within 4Å: Chain A: D.73, Y.84, F.176, H.228, K.234, S.270, Y.274 Ligand excluded by PLIP GOL.8: 5 residues within 4Å: Chain A: S.59, L.60, A.61, K.64, R.386 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain A: F.176, R.221, D.225, H.228, Y.229 Ligand excluded by PLIP GOL.10: 8 residues within 4Å: Chain A: T.123, T.166, E.167, F.169, Y.170, R.214, F.217, Q.218 Ligand excluded by PLIP GOL.11: 5 residues within 4Å: Chain A: D.276, T.280, P.297, W.298, Q.299 Ligand excluded by PLIP GOL.12: 7 residues within 4Å: Chain A: L.254, R.257, M.258, L.487, Y.490, P.491, F.492 Ligand excluded by PLIP GOL.13: 7 residues within 4Å: Chain B: P.115, T.116, E.393, E.397, Y.453, G.457, L.459 Ligand excluded by PLIP GOL.14: 4 residues within 4Å: Chain B: T.166, F.169, Y.170, I.171 Ligand excluded by PLIP GOL.15: 6 residues within 4Å: Chain B: D.71, D.73, T.174, F.176, D.370, H.371 Ligand excluded by PLIP GOL.16: 8 residues within 4Å: Chain B: K.381, R.475, Y.476 Chain D: A.133, Y.134, R.163, S.471, R.475 Ligand excluded by PLIP GOL.17: 9 residues within 4Å: Chain B: F.302, D.303, L.304, I.305, Q.341, H.342, G.343, I.344, Y.346 Ligand excluded by PLIP GOL.18: 6 residues within 4Å: Chain B: D.271, Y.272, V.307, D.308, G.329, L.331 Ligand excluded by PLIP GOL.19: 7 residues within 4Å: Chain B: D.73, Y.84, F.176, H.228, K.234, S.270, Y.274 Ligand excluded by PLIP GOL.20: 5 residues within 4Å: Chain B: S.59, L.60, A.61, K.64, R.386 Ligand excluded by PLIP GOL.21: 5 residues within 4Å: Chain B: F.176, R.221, D.225, H.228, Y.229 Ligand excluded by PLIP GOL.22: 8 residues within 4Å: Chain B: T.123, T.166, E.167, F.169, Y.170, R.214, F.217, Q.218 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain B: D.276, T.280, P.297, W.298, Q.299 Ligand excluded by PLIP GOL.24: 7 residues within 4Å: Chain B: L.254, R.257, M.258, L.487, Y.490, P.491, F.492 Ligand excluded by PLIP GOL.25: 7 residues within 4Å: Chain C: P.115, T.116, E.393, E.397, Y.453, G.457, L.459 Ligand excluded by PLIP GOL.26: 4 residues within 4Å: Chain C: T.166, F.169, Y.170, I.171 Ligand excluded by PLIP GOL.27: 6 residues within 4Å: Chain C: D.71, D.73, T.174, F.176, D.370, H.371 Ligand excluded by PLIP GOL.28: 8 residues within 4Å: Chain A: A.133, Y.134, R.163, S.471, R.475 Chain C: K.381, R.475, Y.476 Ligand excluded by PLIP GOL.29: 9 residues within 4Å: Chain C: F.302, D.303, L.304, I.305, Q.341, H.342, G.343, I.344, Y.346 Ligand excluded by PLIP GOL.30: 6 residues within 4Å: Chain C: D.271, Y.272, V.307, D.308, G.329, L.331 Ligand excluded by PLIP GOL.31: 7 residues within 4Å: Chain C: D.73, Y.84, F.176, H.228, K.234, S.270, Y.274 Ligand excluded by PLIP GOL.32: 5 residues within 4Å: Chain C: S.59, L.60, A.61, K.64, R.386 Ligand excluded by PLIP GOL.33: 5 residues within 4Å: Chain C: F.176, R.221, D.225, H.228, Y.229 Ligand excluded by PLIP GOL.34: 8 residues within 4Å: Chain C: T.123, T.166, E.167, F.169, Y.170, R.214, F.217, Q.218 Ligand excluded by PLIP GOL.35: 5 residues within 4Å: Chain C: D.276, T.280, P.297, W.298, Q.299 Ligand excluded by PLIP GOL.36: 7 residues within 4Å: Chain C: L.254, R.257, M.258, L.487, Y.490, P.491, F.492 Ligand excluded by PLIP GOL.37: 7 residues within 4Å: Chain D: P.115, T.116, E.393, E.397, Y.453, G.457, L.459 Ligand excluded by PLIP GOL.38: 4 residues within 4Å: Chain D: T.166, F.169, Y.170, I.171 Ligand excluded by PLIP GOL.39: 6 residues within 4Å: Chain D: D.71, D.73, T.174, F.176, D.370, H.371 Ligand excluded by PLIP GOL.40: 8 residues within 4Å: Chain B: A.133, Y.134, R.163, S.471, R.475 Chain D: K.381, R.475, Y.476 Ligand excluded by PLIP GOL.41: 9 residues within 4Å: Chain D: F.302, D.303, L.304, I.305, Q.341, H.342, G.343, I.344, Y.346 Ligand excluded by PLIP GOL.42: 6 residues within 4Å: Chain D: D.271, Y.272, V.307, D.308, G.329, L.331 Ligand excluded by PLIP GOL.43: 7 residues within 4Å: Chain D: D.73, Y.84, F.176, H.228, K.234, S.270, Y.274 Ligand excluded by PLIP GOL.44: 5 residues within 4Å: Chain D: S.59, L.60, A.61, K.64, R.386 Ligand excluded by PLIP GOL.45: 5 residues within 4Å: Chain D: F.176, R.221, D.225, H.228, Y.229 Ligand excluded by PLIP GOL.46: 8 residues within 4Å: Chain D: T.123, T.166, E.167, F.169, Y.170, R.214, F.217, Q.218 Ligand excluded by PLIP GOL.47: 5 residues within 4Å: Chain D: D.276, T.280, P.297, W.298, Q.299 Ligand excluded by PLIP GOL.48: 7 residues within 4Å: Chain D: L.254, R.257, M.258, L.487, Y.490, P.491, F.492 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hnizda, A. et al., Oligomeric interface modulation causes misregulation of purine 5 -nucleotidase in relapsed leukemia. Bmc Biol. (2016)

Release Date

2016-09-21

Peptides

Cytosolic purine 5'-nucleotidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Cytosolic purine 5'-nucleotidase