SMTL ID : 5l6x.1

CRYSTAL STRUCTURE OF HGSTP1-1 COMPLEXED WITH FERROCENE-GLUTATHIONE CONJUGATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

11 x AZI: AZIDE ION(Non-covalent)

AZI.1: 2 residues within 4Å: Chain A: Y.109 Ligands: 6SG.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.52 AZI.2: 5 residues within 4Å: Chain A: G.13, R.14, I.105, Y.109 Ligands: 6SG.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.14 Water bridges: A:R.14 AZI.3: 4 residues within 4Å: Chain A: F.143, Q.148, I.149, R.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.149, A:R.187, A:R.187 Water bridges: A:I.149 AZI.4: 4 residues within 4Å: Chain A: E.98, C.102 Chain B: D.99 Ligands: AZI.11 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:E.98, B:D.99 Water bridges: A:R.14, A:R.14, A:N.67, B:E.98, B:D.99 AZI.5: 1 residues within 4Å: Chain A: D.172 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.172, A:D.172 AZI.6: 2 residues within 4Å: Chain A: D.58, G.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.58 AZI.8: 5 residues within 4Å: Chain B: G.13, R.14, I.105, Y.109 Ligands: 6SG.13 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.14 Water bridges: B:G.13, B:R.14, B:R.14, B:Y.109, B:Y.109 AZI.9: 4 residues within 4Å: Chain B: F.143, Q.148, I.149, R.187 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.149, B:R.187, B:R.187 Water bridges: B:Q.148, B:I.149 AZI.10: 2 residues within 4Å: Chain B: R.183, A.186 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.183 AZI.11: 3 residues within 4Å: Chain A: C.102 Chain B: C.102 Ligands: AZI.4 3 PLIP interactions: 3 interactions with chain B Water bridges: B:D.99, B:C.102, B:C.102 AZI.12: 4 residues within 4Å: Chain A: R.75, Y.80 Chain B: R.75, Y.80 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.75, B:R.75, B:R.75, B:Y.80

2 x 6SG: S-[N-(ferrocenylmethyl)carbamoylmethyl]-glutathione(Non-covalent)

6SG.7: 17 residues within 4Å: Chain A: Y.8, F.9, V.11, R.14, V.36, W.39, K.45, G.51, Q.52, L.53, Q.65, S.66, Y.109, G.206 Chain B: D.99 Ligands: AZI.1, AZI.2 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.52, A:L.53, A:L.53, A:Q.65, A:Q.65, A:S.66, A:Y.109 Water bridges: A:R.14, A:Q.65, A:Q.65, A:N.67, A:E.98, B:D.99 Salt bridges: A:R.14, A:K.45 6SG.13: 17 residues within 4Å: Chain A: D.99 Chain B: Y.8, F.9, V.11, R.14, V.36, W.39, K.45, G.51, Q.52, L.53, P.54, Q.65, S.66, Y.109, G.206 Ligands: AZI.8 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Q.52 Hydrogen bonds: B:Q.52, B:L.53, B:L.53, B:Q.65, B:Q.65, B:S.66, B:Y.109 Water bridges: B:Q.65, B:N.67, B:E.98, B:E.98, B:Y.109, A:D.99 Salt bridges: B:R.14, B:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lopez-Jaramillo, F.J. et al., CRYSTAL STRUCTURE OF HGSTP1-1 COMPLEXED WITH FERROCENE-GLUTATHIONE CONJUGATE. To Be Published

Release Date

2017-06-28

Peptides

Glutathione S-transferase P: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase P