SMTL ID : 5l74.1

Plexin A2 extracellular segment domains 4-5 (PSI2-IPT2), resolution 1.36 Angstrom

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: F.103, N.104, S.107 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.106, A:S.107 Water bridges: A:N.104, A:N.104 NAG.2: 2 residues within 4Å: Chain A: V.65, N.112 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.112 NAG.3: 2 residues within 4Å: Chain A: N.3, S.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.3, A:S.5 Water bridges: A:S.5

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: W.22, K.24, N.27, W.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.22, A:N.27 NA.5: 5 residues within 4Å: Chain A: L.52, N.141, P.142, Q.143, L.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.52, A:Q.143

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 7 residues within 4Å: Chain A: C.23, K.24, Y.25, R.26, C.36, S.37, G.41 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, Y. et al., Structural Basis for Plexin Activation and Regulation. Neuron (2016)

Release Date

2017-03-15

Peptides

Plexin-A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Plexin-A2