SMTL ID : 5l78.1

Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase domain (in NAD+ bound form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: L.174, D.175, C.204, G.205, G.206, R.297 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.206, A:R.297, A:R.297 Water bridges: A:G.206 EDO.2: 3 residues within 4Å: Chain A: H.417, E.423, I.495 No protein-ligand interaction detected (PLIP) EDO.3: 9 residues within 4Å: Chain A: E.403, K.404, D.405, G.433, D.434, I.435, G.437, F.438, S.439 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.405, A:D.405, A:G.437

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.4: 27 residues within 4Å: Chain A: G.58, S.59, G.60, I.62, S.82, D.83, M.84, Q.87, M.102, D.103, I.104, C.105, L.124, L.125, P.126, Y.127, L.129, H.130, A.147, S.148, L.172, G.173, L.174, D.175, P.176, W.223, V.445 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.223, A:V.445, A:V.445 Hydrogen bonds: A:S.59, A:S.59, A:D.83, A:Q.87, A:D.103, A:I.104, A:C.105, A:L.125, A:A.147, A:S.148, A:L.174, A:D.175 NAD.5: 25 residues within 4Å: Chain B: G.58, S.59, G.60, I.62, S.82, D.83, M.84, Q.87, M.102, D.103, I.104, L.124, L.125, P.126, Y.127, L.129, H.130, A.147, S.148, L.172, G.173, L.174, D.175, P.176, V.445 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:I.62, B:V.445, B:V.445 Hydrogen bonds: B:S.59, B:S.59, B:S.82, B:D.83, B:Q.87, B:D.103, B:I.104, B:L.125, B:S.148, B:L.174, B:D.175, B:P.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kopec, J. et al., Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase domain (in NAD+ bound form). To Be Published

Release Date

2017-05-10

Peptides

Alpha-aminoadipic semialdehyde synthase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-aminoadipic semialdehyde synthase, mitochondrial